Edef010403.1
Basic Information
- Insect
- Erannis defoliaria
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905404285.1
- Location
- FR990071.1:19005042-19018275[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-74 6.2e-70 236.5 22.9 1 297 123 405 123 408 0.89 2 2 1 2.8e+04 -6.2 14.8 196 270 391 463 380 482 0.55
Sequence Information
- Coding Sequence
- ATGGGCCATCGATTAGAAGTGGCCACGCCAGATAACAGCGACGATGAGAGCGGGGATGCCTTCACCGACGGAGATTTCGGAGACTCCGACGACGAGGCCATTCTCGAACGCAATGATAGCAACTCTTCGAACATCCCCGTCAACGAGACCGTCAATGAAGCGATGGACAAAACACTCACAAACGGAAACTGCTCTCAAGATGCACATGAGACATCTCTCGAGGAACCACCTAAAGTAAACGGACGTAAGAACAGTAACAATCAAAGTGATGTGGAAAATTATAGTGCCACTTCGGATGTGAGAAGGGATTCACACGGAGACCAGAATCCTTCGATAGTCGGGATTCTAGGAGACCAGCACAATCATGCGGAGCAGCGGCTGGCGGCGCGGCGCGCGGCGCGGGCGGAGGCGCGTGAGATCCGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTACGACATGTATGCAGAGACGGTGGGGAGGCGCGCCGGCACGCGGCTGGCGGTGCTCAGCCCTGCCGTCAGCCTAGTGCACTCGCCCCGTCGGAGCTCGGAAGACGCAGACGACACCTTTAACATTAAAGACTTAAGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATACTGAACGCGCAGCTCGACAACGATAAGGCGGCGCTGCACTACCAGCTCGAGCTGCTCAAGGACCGCATCCTCGAGCTGCAGGAGGAGTACGCGCAGCTACAGCGCGAGCACCGCGAGAAGTGCTCGGCGCACGAGCGGCTGAAGCGCGAGCACGCGTCCACGGAGCGCGAGCTGGCGTGCGCGCGGGACGCGGTGCGCGCGCGGGACGCGGCCGCCGCCGCCGCGGGGTTCGCCTTCGCGGAGGCGGCGCCCGGCGCCACGCACGCCGAGGGCTTCGGCGCCGTGCCGCCGCTCGCGCTGCTCTCCCACCTGCAGGAGCAGGCGCTCGCCGACCAGGGCGAGGGCACGCTCGACGTGCGGTTGCAGAAGTTGGTGAGCGCGAAGGCCGCGCTGGAGTCGGAGGTTCGCAAGCTGAAGCTGACGCTGAACGAGGAGCGCGCGGCGCGGCACAACGGCGTCTCCAACCTACACGATGCCGACTACGAGAACGAACTGGAGAGTCTCCGCAAGTCGGTCTCCGAGGCGAAAGGTCGCGCGGCGCGGGCGGAGGCGGAGGCGGCGCTGCAGGCGGCCGGCGTGGCGCGGCTCGAGGCGCAGCTGCAGCGGCTGCGGGCGCGGCAAGACGCCACCGACGAACGCGAGGAACAACTCAAGCAGGAGCGGCGCAAGCTGCAGCGCGAGGCGCGGGAAGCTCTCAACCGGGTGGAGGAGCTGGAGACGGAGAACAGTCACCTCACCAAACGGCTCGACAAACTAAAGAACGCCAAGTCGGCGCTGCTGAAGGACCTGTGA
- Protein Sequence
- MGHRLEVATPDNSDDESGDAFTDGDFGDSDDEAILERNDSNSSNIPVNETVNEAMDKTLTNGNCSQDAHETSLEEPPKVNGRKNSNNQSDVENYSATSDVRRDSHGDQNPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGTRLAVLSPAVSLVHSPRRSSEDADDTFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDRILELQEEYAQLQREHREKCSAHERLKREHASTERELACARDAVRARDAAAAAAGFAFAEAAPGATHAEGFGAVPPLALLSHLQEQALADQGEGTLDVRLQKLVSAKAALESEVRKLKLTLNEERAARHNGVSNLHDADYENELESLRKSVSEAKGRAARAEAEAALQAAGVARLEAQLQRLRARQDATDEREEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00250477;
- 90% Identity
- iTF_00926625;
- 80% Identity
- -