Amar001141.1
Basic Information
- Insect
- Agriopis marginaria
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_932301435.1
- Location
- CAKOAR010000009.1:2041986-2060566[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-75 1.6e-70 238.1 22.6 1 297 123 406 123 409 0.89 2 2 0.28 6.3e+03 -3.5 9.5 128 170 429 471 415 483 0.46
Sequence Information
- Coding Sequence
- ATGGGGCATCGTTCAGAAGTGGCCACGCCTGATAACAGCGACGAAGAGAGCGGAGGCGCCTTCACCGACGGAGACTTCGGAGACTCCGACGATGAGACCATTCTTGAACGCAATGATAGCAAGCCTTCGAACATCCCTGTCAACGAGACTGTTAATGAAGCGATCGATAAAACTCTCACAAACGGCAACTGTTCTCATGATGGACACGATGCGTCTCCCGAGGGTCTACCTCAAGTGAACGGACGTAAGAACAGTGACAATCAAAGTGATGTGGAAAATTACAGTGCTGCGTCGGATGTGAGGAGAGATTCACACGGAGACCAGAATCCTTCGATTGTGGGGATTCTAGGAGACCAGCACAGTCATGCGGAGCAGCGACTGGCAGCGCGGCGCGCGGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGCGAGTTGGAGCGCCAGCAGCGCGAGCAGGAGGATCATGCCGACAAGGCGTATGACATGTATGCAGAAACGGTGGGTCGTCGTGGCGGCACGCGGCTCGCGGCGCTCAGCCCCGCCGTCAGCCTGGTGCACTCGCCGCGGAGGAGCTCCGAGGACTCCGCGGACGATACCTTTAATATTAAGGACTTAAGGCACGAATTGAAAGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTGCACTACCAGCTCGAGCTGCTCAAGGACCGCATTCTCGAGCTGCAGGAGGAGTACGCGCAGCTGCAGCGCGAGCACCGCGAGAAGTGTTCCCTGCACGAGCGGCTGAAACGCGAGCACGTGTCCACGGAGCGCGAGCTGGCGTGCGCGCGAGACGCGGTGCGCGCGCGCGACTCGGCCGCCGCCGCCGCGGGGTTCGCGTTCGCGGAGGCGGCGCCCGGCGCCACGCACGCGGAGGGGTTCGGCGCTGTGCCGCCGCTCGCGCTTCTCTCGCACCTCCAGGAGCAGGCGCTAGCGGACCAGGGCGAGGGCACGCTGGACGTGCGGTTGCAGAAGCTGGTGAGCGCGAAGGCGGCCCTGGAGTCAGAAGTTCGCAAATTAAAGCTGACGCTGAACGAAGAACGAGCCGCGAGACAGAACGGCGTCTCCAACCAACACGACGCGGATTACGAAAACGAATTGGAATGCCTACGTAAGTCGGTATCGGAGGCGAAAGGTCGCGCGGCGCGGGCGGAGGCCGAGGCGGCTCTACAGGCGGCGGGAGTCGCGCGACTCGAGGCGCAACTGCAGCGGCTGCGCGCGCGCCAGGATGCCACCGACGAACGAGAGGAGCAACTGAAGCAGGAGCGGCGCAAGCTGCAGCGCGAGGCGCGGGAAGCTCTCAACCGGGTGGAAGAACTGGAGACGGAGAACAGTCACCTCACCAAGCGGCTCGACAAACTGAAGAATGCCAAATCAGCGCTTCTGAAAGATCTGTGA
- Protein Sequence
- MGHRSEVATPDNSDEESGGAFTDGDFGDSDDETILERNDSKPSNIPVNETVNEAIDKTLTNGNCSHDGHDASPEGLPQVNGRKNSDNQSDVENYSAASDVRRDSHGDQNPSIVGILGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPAVSLVHSPRRSSEDSADDTFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDRILELQEEYAQLQREHREKCSLHERLKREHVSTERELACARDAVRARDSAAAAAGFAFAEAAPGATHAEGFGAVPPLALLSHLQEQALADQGEGTLDVRLQKLVSAKAALESEVRKLKLTLNEERAARQNGVSNQHDADYENELECLRKSVSEAKGRAARAEAEAALQAAGVARLEAQLQRLRARQDATDEREEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00250477;
- 90% Identity
- iTF_00926625;
- 80% Identity
- -