Aleu005620.1
Basic Information
- Insect
- Agriopis leucophaearia
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949125355.1
- Location
- OX421265.1:17770867-17788914[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-75 3.3e-71 240.7 23.5 1 297 122 405 122 408 0.90 2 2 0.2 5.7e+03 -3.1 9.3 127 169 427 469 406 482 0.47
Sequence Information
- Coding Sequence
- ATGGGGCATCGATCAGAAGTGGCCACGCCTGATAACAGCGACGAGGAGAGCGGGGGCGCCTTCACCGACGGAGACTTCGGAGACTCCGACGATGACACCATTCTTGACAATGATAGCAAGCCTTCGAACATCCCTGTCAACGAGACGGTCAATGAAGCAATCGATAAAACTCTCACAAACGGCAACTGTTCTCATGATGGACACGACGCGTCTCCCGAGGGTCTTCCTCAAGTGAACGGACGTAAGAACAGTGACAATCATAGTGATGTGGAAAATTACAGTGCTACGTCGGATATGAGAAGAGATTCACACGGAGACCAGAATCCTTCGATTGTGGGCATTCTAGGAGACCAGCACAATCATGCGGAGCAGCGTCTGGCAgcgcggcgcgcggcgcgggcggAGGCACGTGAGATACGCATGCGGGAATTGGAGCGGCAGCAGCGCGAACAGGAGGATCATGCCGACAAGGCGTATGACATGTATGCAGAAACCGTGGGTCGTCGCGGCGGCACGCGGCTCGCGGCGCTCAGTCCCGCCGTCAGCTTGGTGCACTCACCGCGGCGGAGCTCTGAGGACTCCGCGGATGACACCTTTAATATTAAAGACTTAAGGCATGAATTGAAAGAAGTGGAGGAGAAGTTCCGGAAGGCGATGATCTTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCCACTACCAGCTCGAGCTGCTCAAGGACCGGATCCTCGAGCTGCAGGAGGAGTACGCGCAGCTACAGCGCGAGCACCGCGAGAAGTGTTCCGTGCACGAGCGGCTGAAGCGCGAGCACGTGTCCACGGAGCGCGAGCTGACGTGCGCGCGGGACgcggtgcgcgcgcgcgacTCGGCCGCCGCGGCCGCCGGGTTCGCGTTCTCGGAGGCGGCGCCCGGCGCCACGCACGCGGAGGGGTTCGGTGCGGTGCCGCCGCTCGCGCTGCTCTCACACGACCAGGAGAAGGCGCTGGCGGACCAGGGCGAGGGCACGCTGGACGTGCGGTTGCAGAAGCTGGTGAGCGCGAAGGCGGCCCTGGAGTCGGAGGTTCGCAAGTTAAAGCTAACGCTGAACGAAGAACGAGCCGCGCGACAGAACGGCGTCTCCAACCAACACGACGCGGATTACGAAAACGAATTGGAAAGTCTACGCAAGTCTGTGTCGGAGGCGAAAGGTCGCGCGGCGCGGGCGGAGGCCGAGGCGGCTCTACAGGCGGCCGGTGTCGCGCGACTCGAGGCTCAGCTGCAGCGGCTGCGCGCGCGCCAGGACGCCACCGACGAACGGGAGGAACAACTGAAGCAGGAGCGGCGCAAGCTGCAGCGGGAGGCGCGGGAAGCTCTCAACCGAGTGGAAGAACTGGAGACCGAGAACAGCCACCTCACCAAGCGGCTCGACAAACTGAAGAACGCCAAGTCAGCGCTTCTGAAAGATCTGTGA
- Protein Sequence
- MGHRSEVATPDNSDEESGGAFTDGDFGDSDDDTILDNDSKPSNIPVNETVNEAIDKTLTNGNCSHDGHDASPEGLPQVNGRKNSDNHSDVENYSATSDMRRDSHGDQNPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPAVSLVHSPRRSSEDSADDTFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDRILELQEEYAQLQREHREKCSVHERLKREHVSTERELTCARDAVRARDSAAAAAGFAFSEAAPGATHAEGFGAVPPLALLSHDQEKALADQGEGTLDVRLQKLVSAKAALESEVRKLKLTLNEERAARQNGVSNQHDADYENELESLRKSVSEAKGRAARAEAEAALQAAGVARLEAQLQRLRARQDATDEREEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00250477;
- 90% Identity
- iTF_00926625;
- 80% Identity
- -