Bstr012468.1
Basic Information
- Insect
- Biston stratarius
- Gene Symbol
- lrrfip2
- Assembly
- GCA_950106695.1
- Location
- OX467112.1:15153340-15167876[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.14 3.6e+03 -2.6 0.5 254 280 78 104 36 106 0.59 2 3 3.1e-74 7.9e-70 236.0 25.1 1 297 123 406 123 409 0.90 3 3 0.45 1.1e+04 -4.2 10.3 123 170 424 471 413 482 0.52
Sequence Information
- Coding Sequence
- ATGGGACATCGATTAGAAGTGGCCACGCCAGATAACAGCGAGGATGAGAGCGGGGACGCCTTCACCGACGGAGACTTCGGGGACTCCGACGACGAGACCATTCTCGAACGCAATGATAGCAAGTCTTCGAACATCCCTGTCAACGAGACGGTCAATGAAACATTAGATAAAACTCTCACTAACGGAAATTCCTCTAGTGATGCACATGAGACGTCTCCGGACGATCAAACTAAAGTGAACGGGCGTAAGAACAGTGTCAATCAAAGTGATGTGGAAAATTATAGTGCGGTCACGGATATAAAAAGGGACTCGCATGGAGACCAGAATCCTTCGATAGTCGGGATTCTAGGAGACCAGCACAATCATGCGGAGCAGCGGCTGGCGGCGAgacgcgcggcgcgggcggagGCGCGGGAGATCCGCATGCGCGAGCTCGAGCGCCAGCAGCGGGAGCAGGAAGACCATGCCGATAAGGCGTATGACATGTATGCAGAGACGGTCGGGCGGCGTGGCGGCACGCGGCTGGCCGCACTCAGTCCCGCCGCCAGCTTGGTGCACTCGCCACGCCGGAGCTCTGAAGACTCCGCAGATGACTCTTTTAATGTTAAAGACTTAAGGCATGAGCTGAAGGAGGTGGAAGAGAAGTTCCGGAAGGCTATGATTCTTAACGCGCAGCTGGACAACGACAAGGCGGCGCTGCACTACCAGCTCGAGCTGCTTAACGACCGCATCCTTGAGCTGCAGGAGGAACACGCTCAACTACAGCGCGAGCACCGCGAGAAGTGCTCCGCGCACGAGCGGCTGAAGCGCGAGCACTGCTCGCGGGAGCGCGAGCTGGAGTGCGCGCGGGATGCGGTGCGCGCGCGGGACGCGGCCGCGGCCGCTGCGGGGTTCGCGTTCGCGGAGGCGGCCGCTGGCGCCTCGCACGCGGAGGGCTTCGGCGCCGTGCCGCCGCTGGCGCTCATCTCGCACCGCCACGAGCAGGCGCTCGCAGACCACGGCGAGGGCACCCTCGACGTCCGGTTGCAGAAGTTGGTGAACGCGAAAGCCGACCTGGAATCGGAGGTTCGCAAACTGAAGCTGACGCTGAACGAGGAGCGCGCGGCGCGACAGAACGGCGTCTCCAGCCAGCACGACGCGGACTACGAGAACGAACTGGAAAGTCTGCGCAAGTGTTTATCCGAGGCGAAAGGTCGAGCGGCGCGTGCGGAGGCGGAGGCGGCGCTGCAGGCGGCCGGCGTCGCGCGGCTGGAGGCGCAGCTGCAGCGACTGCGGGCGCGGCAGGACGCCACCGACGAACGAGAAGAGCAGCTCAAGCAGGAGCGGCGCAAGCTGCAGCGGGAGGCGCGGGAAGCTCTCAACCGGGTGGAGGAATTGGAGACGGAAAACAACCATCTGACCAAACGGCTCGACAAACTGAAGAACGCCAAGTCGGCGCTGTTGAAGGACCTGTGA
- Protein Sequence
- MGHRLEVATPDNSEDESGDAFTDGDFGDSDDETILERNDSKSSNIPVNETVNETLDKTLTNGNSSSDAHETSPDDQTKVNGRKNSVNQSDVENYSAVTDIKRDSHGDQNPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPAASLVHSPRRSSEDSADDSFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLNDRILELQEEHAQLQREHREKCSAHERLKREHCSRERELECARDAVRARDAAAAAAGFAFAEAAAGASHAEGFGAVPPLALISHRHEQALADHGEGTLDVRLQKLVNAKADLESEVRKLKLTLNEERAARQNGVSSQHDADYENELESLRKCLSEAKGRAARAEAEAALQAAGVARLEAQLQRLRARQDATDEREEQLKQERRKLQREAREALNRVEELETENNHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00250477;
- 90% Identity
- iTF_00926625;
- 80% Identity
- -