Lcup010151.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- bab1
- Assembly
- GCA_001187945.1
- Location
- JRES01000611.1:852864-854605[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-17 1.6e-14 53.0 0.0 1 43 56 99 56 101 0.95 2 2 4.9 7.7e+03 -3.6 2.9 4 19 194 212 191 218 0.65
Sequence Information
- Coding Sequence
- GCGAAAATGTTGGAAAACTCACATGCATGGATGGGAGCTTCGGGTTCCTCAATAGCAGACAGTTATCAATATCAACTGCAGTCTATGTGGCAAAAATGTTGGAACACCAATCAAAGTTTAATGCATCATTTGCGATTTCGTGAACGAGGTCCCTTAAAGTCGTGGCGTCCCGAAACGATGGCAGAAGCAATTTTTAGTGTACTAAAAGAAGGTTTATCACTTTCACAGGCAGCACGAAAGTACGATATACCTTATCCCACATTTGTTCTCTATGCCAATCGAGTGCACAACATGTTGGGTCCTTCGATTGATGGAGGCCCCGATTTGAGACCGAAAGGCAGAGGACGGCCACAACGCATACTGCTGGGCATCTGGCCAGATGAACATATCAAAGGTGTCATAAAAACCGTTGTCTTCCGTGATGCCAAAGATCTGAAGGAGGAAGGTCTGGCGCACTTGCCCTATGGACGGCATTCGcCTGTTTTTCCATTTCAGGAAGGACCATTGAGTTATCCTGGTGTAGGTGGTCAATGTCCAAATGGAATGCCGGGGGCCACTGGTGACCAAATGTCACAAGAGGCAACAGCTGCAGCAGTGGCGGCGGTAGCTCATAATATACGTCAGCAAATGCAAATGGCGGCGGCGgctcaacagcaacagcagatGGGCGAAAGTCATGGTGGTCCAAATCTATTTAATCTTCCGCCTCATATGGCTAGTGGTGGACCAATGTCTGGACCACCTGGTTCAGGAGGTGTACCTCTTCCTAAAGCCAGCATTTCACCGGCTTTAAGCTCCTCATCGAATACCGCTAGTATGAGCGCAATGATGGGGCCAAGACATGTTCCTTCACCTTGTGGACCCAATTTACCGGGCATGCCACAACTGCCGCCTGGTATGGCGGTAGCTTTGCATATGGCCGGCAGTGGTCCTGGTGGTCGATGTGATCCCACTTCCGTGTTAagtcaacagcaacaacatcaactcCAACATTTGCACTTACAACAGCAGCACGCACTTCACCAGCAGCAACAAaagcatcaacaacaacatcaaatggCATTTGGTCCACACGGCACATCCTTGAGTCATACATCTGTTGGCGGCACTCCCTCACACACGGTCGTTCATCCCTCACTACAAAAATCAACGACGGCAACCTCAACAAAACCACACTCTTCCACTTCATCGCCGTCCAGACGTAACAGTCCTCACAGTCTGACACCCTTACATTCCCCCCTAACGGAACTTGGTCTAGAAATGAGTTTTAAACCAAGCCGACCATTTTCACCCTCCCGTCTATTTTCCGATGATATATCCGATATTGTTGGCGTTGCGGCCTCGCCATTACGCTCTCCCTCAACGTCAACACATCCGTCATCCTCTCTAGCAGCAGTTACGACAGCAACGATAACTACCACTAGCAGTATTAATACAGCCACCGTCAGAGCATCTTCCTCAGAGCCATCAGGGTCCGCCGCTACATCACAAACAACAACGGCGACATCAGCCGGAGGTATTGACAGTACAGCATCCGCATCAAGTAACATAAGTTCCACGGGGATTAAACTCGAACCTATTACGACAAGTAGCGATTAA
- Protein Sequence
- AKMLENSHAWMGASGSSIADSYQYQLQSMWQKCWNTNQSLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDLKEEGLAHLPYGRHSPVFPFQEGPLSYPGVGGQCPNGMPGATGDQMSQEATAAAVAAVAHNIRQQMQMAAAAQQQQQMGESHGGPNLFNLPPHMASGGPMSGPPGSGGVPLPKASISPALSSSSNTASMSAMMGPRHVPSPCGPNLPGMPQLPPGMAVALHMAGSGPGGRCDPTSVLSQQQQHQLQHLHLQQQHALHQQQQKHQQQHQMAFGPHGTSLSHTSVGGTPSHTVVHPSLQKSTTATSTKPHSSTSSPSRRNSPHSLTPLHSPLTELGLEMSFKPSRPFSPSRLFSDDISDIVGVAASPLRSPSTSTHPSSSLAAVTTATITTTSSINTATVRASSSEPSGSAATSQTTTATSAGGIDSTASASSNISSTGIKLEPITTSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00922028; iTF_00975522; iTF_01259138; iTF_01236580; iTF_01174148; iTF_01237576; iTF_01235644; iTF_01373988; iTF_00899463; iTF_01137921; iTF_00741774; iTF_00760016; iTF_00435446; iTF_00900506; iTF_01312937; iTF_01315431; iTF_01313730; iTF_01260919; iTF_01194319; iTF_01314585; iTF_00997647; iTF_01376559; iTF_00258790; iTF_01427399; iTF_00199792; iTF_00259697; iTF_01109267; iTF_01176858; iTF_01201525; iTF_01162182; iTF_00655247; iTF_00350105;
- 90% Identity
- iTF_00922028; iTF_00258790; iTF_00259697; iTF_00199792;
- 80% Identity
- -