Sper018213.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- bab1
- Assembly
- GCA_014635995.1
- Location
- CM025792.1:78444392-78446115[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-17 3.1e-14 53.0 0.0 1 43 55 98 55 100 0.95 2 3 6.5 1.3e+04 -3.4 2.5 4 15 193 207 190 216 0.65 3 3 3.3 6.6e+03 -2.4 0.1 5 15 298 308 297 309 0.86
Sequence Information
- Coding Sequence
- ATGTTGGAGAATTCGCACGCTTGGATGGGTGCATCTGGTTCTTCGATTgcagCAGACAGTTATCAATATCAGTTGCAATCGATGTGGCAAAAATGTTGGAATACAAATCAAAGTTTAATGCATCATTTGAGATTTCGCGAAAGGGGTCCTTTAAAGTCATGGCGTCCAGAAACAATGGCTGAAGCTATTTTTAGTGTTCTTAAGGAGGGCTTATCACTATCACAAGCAGCACGGAAATATGATATTCCATATCCAACGTTTGTTCTTTATGCAAATAGAGTGCACAATATGCTGGGTCCCTCTATAGACGGAGGGCCCGATCTAAGGCCAAAAGGCAGAGGTCGGCCACAACGTATATTGTTGGGTATTTGGCCCGATGAGCATATAAAAGGTGTAATAAAAACTGTTGTTTTTCGCGATGCCAAAGATCTTAAAGATGAGGGCCTAACGCATATGCCCTACGGTCGGCATTCGcccgttttttcATTTCAGGAAGCACCGATTACTTATCCTGGTGTTAGTGCTCAATGTCCGAATGGAATGCCCGGTGCTGCTGGTGAACAGATGTCGCAAGAGGCTACGGCAGCTGCAGTAGCTGCTGTTGCCCACAATCTGCGCCAGCAAATGCAAATGGCCGCAGCAgcccaacagcaacaacttggTGATACGCATAGCACACCGAATCTCTTTAATCTTCCGCCACATTTAGCTAGTGGAGGCCCTCTTTCGGGGCCACCTGGTCCAGTTGGAGTGCCTCTGCCTAAAGCAAGTATTTCGCCGGCCCTTAGTTCATCATCGAATACAGGTGGTGTTGGCTCAATGATGGCCTCTAGACATGTTCCTTCCCCCTGTGGACCCACCTTGCCTGGCATGCATCAATTACCGCCGGGTATGGCTGCAGCATTACATATGGCCAGTAGTGGCCATAGTGGTCGCTGTGACCCGAATACTATGTTaacgcaacagcaacaacatcagctgCAGCAATTGCACTTGCAGCAACAACATgcactgcaacaacaacaacaaaaacatcaaatgGGCTATGGATCGCATACACAATCCTTAAGCCACTCCTCCTTGGCAGGTCCTCACCACTCACATACAATCGTCCAGCAATCAATGCAAAAGACAACAACGACTTcctcaacaaaaacaacatcttCCAGATCATCGCCATCAATGCGAACTAGTCCGCACAGTATTACTCCATTACATTCACCTTTAACGGAATTGGGTCTTGAAATGAGTTTTAAACCATCACGCCCCTTTTCACCATCCCGTCTATTCTCCGATGATATTTCCGATATTGTTGGCGTGGCAGGCTCACCATTACGATCGCCATCATTAACAATTTCATCATCCTCGGCAAtgacaacatcaacaataacaacaactaatagCATTACAACAAGCACGGCTGGTGCAACAACATCAGAGCCACCAACATCGAGCACAAGTATAATAACATCCGCCTCTGGACCTAGCCACAGTACTAATGCAACCGCAACAAGCAACTTAAGTTCCACGGGAATAAAACTCGAACCTATTACGACAAGTAGCGATTAA
- Protein Sequence
- MLENSHAWMGASGSSIAADSYQYQLQSMWQKCWNTNQSLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDLKDEGLTHMPYGRHSPVFSFQEAPITYPGVSAQCPNGMPGAAGEQMSQEATAAAVAAVAHNLRQQMQMAAAAQQQQLGDTHSTPNLFNLPPHLASGGPLSGPPGPVGVPLPKASISPALSSSSNTGGVGSMMASRHVPSPCGPTLPGMHQLPPGMAAALHMASSGHSGRCDPNTMLTQQQQHQLQQLHLQQQHALQQQQQKHQMGYGSHTQSLSHSSLAGPHHSHTIVQQSMQKTTTTSSTKTTSSRSSPSMRTSPHSITPLHSPLTELGLEMSFKPSRPFSPSRLFSDDISDIVGVAGSPLRSPSLTISSSSAMTTSTITTTNSITTSTAGATTSEPPTSSTSIITSASGPSHSTNATATSNLSSTGIKLEPITTSSD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00921367;
- 90% Identity
- iTF_01312937;
- 80% Identity
- -