Cvic015343.2
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- bab1
- Assembly
- GCA_958450345.1
- Location
- OY288234.1:8135186-8136975[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-17 4.1e-14 53.0 0.0 1 43 55 98 55 100 0.95 2 2 6.8 1.9e+04 -3.5 2.6 4 14 193 206 190 216 0.65
Sequence Information
- Coding Sequence
- ATGTTGGAAAATTCGCATGCCTGGATGGGAGCATCTAGTTCATCAATAGCAgCAGACAGTTATCAGTATCAATTGCAGTCCATGTGGCAGAAATGTTGGAATACAAATCAAAGTTTAATGCATCATTTGCGATTTCGAGAACGTGGTCCTTTGAAGTCATGGCGTCCCGAGACAATGGCAGAAGCTATTTTTAGTGTGCTGAAAGAGGGTTTGTCACTTTCGCAGGCAGCACGAAAGTATGATATTCCTTATCCCACATTTGTGTTATATGCCAACCGGGTGCACAATATGCTGGGACCATCTATTGATGGAGGCCCCGATTTGAGGCCGAAAGGCAGAGGTCGGCCGCAACGCATTCTGCTGGGTATCTGGCCGGATGAGCATATCAAGGGTGTCATAAAAACTGTTGTCTTCCGCGATGCCAAAGATCTGAAGGATGAAGGTCTGGGTCACATGCCCTATGGACGCCATTCGccTGTTTTTCCATTTCAGGAGGGACCATTAAGTTATTCTGGAGTTGCTGGACAATGTCCTAATGGAATGCCAGGTGCCACCGGCGACCAGATGTCGCAAGAAGCCACAGCTGCAGCAGTGGCGGCAGTTGCTCATAATATACGTCAGCAAATGCAAATGGCGGCAGCagctcaacaacaacaacagcagcttGGCGAGGGCCATGGTGGGCCGAATCTGTTTAATCTTCCGCCTCATATGGCTAGCGGTGGTCCCATGACGGGACCGCCTGGCTCAGGAGGAGTGCCTCTACCTAAAGCAAGTATTTCTCCGGCACTAAGCTCTTCATCGAATACGGCTGGCATTAGCTCAATGATGGGGCCACGACATGTTCCTTCACCTTGTGGACCCAATTTGCCGGGTATGCCCCAACTGCCGCCTGGCATGGCTGTGGCTTTGCACATGGCAGGCAGTGGTCCGGGTGGTCGTTGTGATCCCAGTAGTGTTTTAagtcaacagcaacaacatcaactcCAACATTTGCATTTACAGCAGCAACATGCTcttcatcaacaacaacagcagcagcagcaacaacaacaacagcaaaagcaTCAACAGCAACACCAAATGACATTTGGGCCACACACCTCATCACTGAGCCACTCCTCGATTGGCGGCACCCCCTCACACACGATGGTTCATCAATCACTGCAAAAAACAACGACGGCTTCCTCAACAAAACCACACTCTTCCACATCATCGCCGTCCAGACGCAACAGTCCCCACAGTCTTACGCCATTACATTCCCCCCTAACCGAACTGGGTTTAGAAATGAGTTTCAAACCATCCCGCCCATTTTCACCCTCCCGTCTATTTTCCGATGATATTTCCGATATTGTTGGTGTTGCTGCCTCACCCCTGCGATCACCCTCAACATCGTCGCATCCATCATCATCAGTAGCAGTTACGACAGCAACGATAACCACCACTAGCAGTATTAATACAGCCACCGTCAGAGCATCTTCCTTAGAGCCATCAGCATCCGCTACATCACAAATGCAACAAGCAACAGGAGCAGGATTAGGATCAGGAGCTATTGATAGTACAGCATCCGCATCAAGCAACATAAGTTCCACGGGGATTAAACTCGAACCCATTACGACAACTAACGATTAA
- Protein Sequence
- MLENSHAWMGASSSSIAADSYQYQLQSMWQKCWNTNQSLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDLKDEGLGHMPYGRHSPVFPFQEGPLSYSGVAGQCPNGMPGATGDQMSQEATAAAVAAVAHNIRQQMQMAAAAQQQQQQLGEGHGGPNLFNLPPHMASGGPMTGPPGSGGVPLPKASISPALSSSSNTAGISSMMGPRHVPSPCGPNLPGMPQLPPGMAVALHMAGSGPGGRCDPSSVLSQQQQHQLQHLHLQQQHALHQQQQQQQQQQQQQKHQQQHQMTFGPHTSSLSHSSIGGTPSHTMVHQSLQKTTTASSTKPHSSTSSPSRRNSPHSLTPLHSPLTELGLEMSFKPSRPFSPSRLFSDDISDIVGVAASPLRSPSTSSHPSSSVAVTTATITTTSSINTATVRASSLEPSASATSQMQQATGAGLGSGAIDSTASASSNISSTGIKLEPITTTND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00921367;
- 90% Identity
- iTF_00921367;
- 80% Identity
- -