Marg020521.3
Basic Information
- Insect
- Metopia argyrocephala
- Gene Symbol
- bab1
- Assembly
- GCA_963576795.1
- Location
- OY756210.1:556969-558699[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-17 4.4e-14 53.0 0.0 1 43 55 98 55 100 0.95 2 2 4 9.4e+03 -2.5 0.4 3 13 192 202 190 207 0.81
Sequence Information
- Coding Sequence
- ATGTTAGAAAATTCACATGCATGGATGGGTAGCTCCGGTTCATCAATTGCAGcAGACAGTTACCAATATCAACTGCAGTCGATGTGGCAAAAATGTTGGAATACAAATCAAAGTTTAATGCATCATTTGCGATTTCGTGAAAGAGGTCCTTTAAAATCATGGCGGCCGGAAACAATGGCTGAAGCAATTTTTAGTGTTCTAAAGGAAGGTTTATCACTTTCACAAGCGGCAAGGAAATATGACATTCCATATCCAACCTTTGTACTGTATGCGAACAGGGTACACAACATGCTGGGGCCTTCTATAGATGGGGGACCTGATTTGAGACCTAAAGGCAGAGGGCGACCACAGCGCATTTTATTGGGGATATGGCCTGATGAACATATTAAGGGTGTTATTAAAACGGTCGTTTTTCGTGATGCTAAAGATCTTAAGGATGAAGGACTGGCGCATATGCCCTATGGACGGCATTCGccAATTTTTCCATTTCAGGAAGGACCGCTTTCTTATCCTGGTGTTGGCGGGCAATGTTCTAATGGAATACCTGGCGCCAGTGGTGATCAGATGTCCCAAGAAGCTACAGCCGCTGCAGTAGCCGCTGTTGCTCATAATTTAAGACAACAAATGCAGATGGCAGCAGTAGCTCAACAGCAGCAACTTGGTGAAACACACGGCGcaccaaatatatttaatattccaCCTCATTTGGCCAGTGGAGGTCCTCTGGCTGGACCACCTGTTTCAGGTGGTGTGCCATTACCTAAAGCGAGTATTTCTCCGGCACTAAGTTCGTCTTCCAACACTGCTGGTGTTGGCACAATGATGGGGCCTCGACATGTTCCTTCTCCTTGTGGACCCACAACATTGCCTGGTATGCATCAGCTACCACCTGGCATGGCTGTAGCACTACATATGGCTGGCAGCGGTCATAGCAGTCGCTGTGATCCAAATGCAATTATATCCCAGCAGCATCAACTTCAGCAGCTGCACttgcagcagcaacaacatgtTCTACAGCAGCAACATAAACACCAACATCAATTAAGCTATGGATCTCACACTCAATCAATGAGCCATTCATCTGTTGCAGGAACTCATTCTCACGCTCTCGTTCaacaaactttacaaaaaacaaCGACGGCTTCCTCAACAAAAACTACTTCTTCCAGATCATCGCCATTAGTACGTACTAGTCCCCACACTCTTACACCCCTACATTCTCCCCTTACGGAACTTGGCCTTGAAATGTCTTTCAAACCTTCCCGTCCATTTTCACCTTCCCGGCTTTTCTCTGACGATATATCAGATCTTGTCGGTGTTGCAGCCTCACCATTGCGATCATCACCATCATCGCTTCCGTCATCATTAGCcattacaacagcaacaataacaacaactagcACCATTAGTAAAAGCACAGCCGACATCACAACACTACAACCCAGAACGTCCGCAACAACTTCTTCAACAGTATCAACATCTTGCACCGAACCAACCAACAGTACCGCATCCGCAACAAGTAACTTAAGTTCCACGGGGATTAAACTCGAACCTATTACGACAACTAGCGATTAA
- Protein Sequence
- MLENSHAWMGSSGSSIAADSYQYQLQSMWQKCWNTNQSLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDLKDEGLAHMPYGRHSPIFPFQEGPLSYPGVGGQCSNGIPGASGDQMSQEATAAAVAAVAHNLRQQMQMAAVAQQQQLGETHGAPNIFNIPPHLASGGPLAGPPVSGGVPLPKASISPALSSSSNTAGVGTMMGPRHVPSPCGPTTLPGMHQLPPGMAVALHMAGSGHSSRCDPNAIISQQHQLQQLHLQQQQHVLQQQHKHQHQLSYGSHTQSMSHSSVAGTHSHALVQQTLQKTTTASSTKTTSSRSSPLVRTSPHTLTPLHSPLTELGLEMSFKPSRPFSPSRLFSDDISDLVGVAASPLRSSPSSLPSSLAITTATITTTSTISKSTADITTLQPRTSATTSSTVSTSCTEPTNSTASATSNLSSTGIKLEPITTTSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00921367;
- 90% Identity
- -
- 80% Identity
- -