Preg028459.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- bab1
- Assembly
- GCA_001735585.1
- Location
- MINJ01167492.1:5700-7464[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-18 4.1e-14 53.0 0.0 1 43 55 98 55 100 0.95 2 2 4 1.9e+04 -3.5 2.6 4 14 193 206 190 216 0.65
Sequence Information
- Coding Sequence
- ATGTTGGAAAATTCACATGCATGGATGGGAGCATCGGGTTCATCAATTGCTGCAGACAGTTATCAGTATCAGCTGCAGTCCATGTGGCAAAAATGTTGGAATACCAATCAAAGTTTAATGCATCATTTGCGATTTCGTGAAAGAGGTCCATTGAAATCATGGCGTCCGGAAACGATGGCAGAAGCAATTTTTAGTGTACTCAAAGAGGGTTTATCACTTTCGCAGGCAGCACGAAAATATGATATTCCCTATCCTACATTTGTTCTATATGCGAATCGGGTGCACAATATGTTGGGGCCGTCTATTGATGGTGGTCCAGATTTAAGACCGAAAGGCCGTGGACGACCCCAACGTATTTTACTGGGAATTTGGCCCGATGAACATATCAAGGGTGTTATCAAAACTGTTGTCTTCCGTGATGCCAAAGATCTAAAGGATGAGGGTCTGGCCCATTTGCCCTATGGACGGCATTCGcCTGTTTTTCCATTTCAGGAGGGTCCTTTGAGTTATCCTGGTGTAGCTGGTCCATGTCCAAATGGCATGCCTGGTGCTGCTGGTGACCAAATGTCACAAGAAGCCACAGCGGCTGCAGTGGCCGCCGTAGCTCATAACATAAGACAACAAATGCAAATGGCAGCAGCGgctcaacaacaacagcaaattgGTGAGGGTCATGGTGGACCGAATTTGTTTAATCTTCCGCCTCATATGGCCAGCGGAGGACCCATGTCGGGGCCTCAAGGTTCAGCAGGTGTACCTCTACCTAAAGCAAGTATTTCTCCCGCATTAAGCTCATCATCGAATACGGCTGGTTTAAGCTCCATGATGGGTCCACGACATGTTCCTTCACCCTGTGGACCTAATTTACCCGGCATGCCCCAACTGCCTCCTGGTATGGCTGTAGCTTTGCACATGGCTGGCGGTGGTCCGGGTGGTCGTTGTGATCCATCTGCCGTTTTGagtcaacagcaacaacatcaattGCAACATTTGCATTTACAACAGCAACATGCCTTgcatcaacaacaaaaacaccaacaacaacaacatcaacatcaaATGGCTTTCGGGCCACACACTTCTTCCTTAAGTCATTCATCTGTAGCCGGTGCACCCTCGCACACGATCGTTCATCAATCCATGCAGAAAACAACGACGGCATCTTCAATAAAACCACCTTCTTCCACATCTTCGCCGTCCAGACGCACCAGCCCTCACAGTCTAACGCCCCTACATTCACCCCTAACAGAACTTGGTCTAGAAATGAGTTTTAAACCATCCCGCCCCTTTTCACCTTCACGTCTATTTTCGGATGATATTTCCGATATTGTAGGTGTTGCTGCCTCACCCTTACGCTCGCCCACAACGTCACATCCATCATCAACAGCAGCCGTAACCACAGCAACAATAACTACCACTAGCAGTATTAATACAGCCACCGTTAGATCATCTTCTTCAGAGCCATCTGCCACATCCGCCACAGCAACATCATCAGCAGCATCGGTAGCTATTGATAGTATGGCCAGCGCATCAAGTAACATAAGTTCCACGGGAATAAAACTCGAACCTATTACGACAACTAGcgattaa
- Protein Sequence
- MLENSHAWMGASGSSIAADSYQYQLQSMWQKCWNTNQSLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDLKDEGLAHLPYGRHSPVFPFQEGPLSYPGVAGPCPNGMPGAAGDQMSQEATAAAVAAVAHNIRQQMQMAAAAQQQQQIGEGHGGPNLFNLPPHMASGGPMSGPQGSAGVPLPKASISPALSSSSNTAGLSSMMGPRHVPSPCGPNLPGMPQLPPGMAVALHMAGGGPGGRCDPSAVLSQQQQHQLQHLHLQQQHALHQQQKHQQQQHQHQMAFGPHTSSLSHSSVAGAPSHTIVHQSMQKTTTASSIKPPSSTSSPSRRTSPHSLTPLHSPLTELGLEMSFKPSRPFSPSRLFSDDISDIVGVAASPLRSPTTSHPSSTAAVTTATITTTSSINTATVRSSSSEPSATSATATSSAASVAIDSMASASSNISSTGIKLEPITTTSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00921367;
- 90% Identity
- iTF_01260919;
- 80% Identity
- -