Chom013136.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- bab1
- Assembly
- GCA_004302925.1
- Location
- PYHX01000858.1:748702-750485[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-18 1.9e-14 53.0 0.0 1 43 55 98 55 100 0.95 2 2 4.1 8.7e+03 -3.5 2.6 4 14 187 200 184 210 0.65
Sequence Information
- Coding Sequence
- ATGTTGGAAAATTCTCATGCATGGATGGGAGCATCGGGTTCATCAATTGCAgCAGACAGTTATCAGTATCAGTTACAGTCCATGTGGCAGAAATGTTGGAATACCAATCAAAGTTTAATGCATCATTTGCGATTTCGTGAGAGAGGTCCACTGAAATCATGGCGTCCGGAAACTATGGCAGAAGCAATTTTTAGTGTACTGAAAGAAGGTTTATCACTTTCGCAAGCAGCACGAAAATATGATATTCCTTATCCCACATTCGTGCTTTATGCGAATCGGGTTCATAATATGCTGGGGCCTTCAATAGATGGTGGTCCCGATTTAAGACCAAAGGGACGGGGTCGTCCTCAACGTATTTTGCTTGGGATATGGCCTGATGAACATATCAAAGGTGTCATTAAAACTGTTGTCTTCCGTGATGCCAAAGATCTGAAAGAAGAGGGTTTGGCCCATTTGCCTTATGGAAGGCATTCGGAGGGACCCTTAAGTTATCCTGGTGTTGGTGGACCATGTCCAAATGGCATGCCAGGTGCAGCTGGTGATCAAATGTCACAAGAAGCCACAGCAGCAGCAGTGGCAGCTGTTGCTCATAACATAAGACAGCAAATGCAAATGGCAGCAGCTgctcaacaacaacagcaaatagGCGAAAGTCATGGTGGCTCAAATCTATTTAACCTCCCGCCTCATATGGCCAGTGGTGGACCTATGTCTGGTCCTCCTGGTGCTGGGGGTGTGCCTCTGCCCAAGGCAAGTATTTCTCCAGCTCTAAGTTCTTCATCAAATACAGCTGGTTTGAGCTCTATGATGGGGCCTCGACATGTTCCTTCACCTTGTGGACCCAATTTACCGGGAATGCCTCAATTGCCACCTAGTATGGCTGTAGCATTGCACATGGCTGGAGGTCCGGGAGGTCGTTGTGATCCATCTGCTGTTTTAAgccagcagcaacaacatcaattcCAACATTtgcatttacaacaacaacacgccctacatcaacaacaaaaacaccagcagcagcaacaacatcaaatgGCTTTCGGGCCTCACACTTCTTCCCTAAGTCATTCATCTATGGCCGGAGCCCCTTCACACACGATGATTCATCAAACCATGCAGAAATCAGCGTCGGCATCTTCAACAAAACCACTTTCTTCCACATCATCGCCGTCCAGACGCAATAGTCCCCATAGTCTAACGCCCTTACATTCCCCCTTAACGGAACTCGGTTTGGAAATGAGTTTTAAACCATCCCGCCCCTTCTCACCATCTCGTCTATTCTCCGATGACATTTCCGATATTGTTGGTGTTGCAGCCTCACCACTACGCTCACCTTCAACATCACACCCTTCTACAGCTACCGCTGTAACCACAGCAACGATAACAACCACAAGCAGTATTAATCCAGCTACCGTTAGATCATCTTCCTCAGAGCCATCAGTATCCGCTATAGCAACAGCTGTCACAACAGCTACATCAACAGCATCCGCTGCGATTGATAGTACGGCCAGCACAACAAGTAACATAAGTTCCACGGGGATTAAACTCGAACCTATTACGACAAGTAGcgattaagtttaaaatatacataaatcacatatgtatacattttag
- Protein Sequence
- MLENSHAWMGASGSSIAADSYQYQLQSMWQKCWNTNQSLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDLKEEGLAHLPYGRHSEGPLSYPGVGGPCPNGMPGAAGDQMSQEATAAAVAAVAHNIRQQMQMAAAAQQQQQIGESHGGSNLFNLPPHMASGGPMSGPPGAGGVPLPKASISPALSSSSNTAGLSSMMGPRHVPSPCGPNLPGMPQLPPSMAVALHMAGGPGGRCDPSAVLSQQQQHQFQHLHLQQQHALHQQQKHQQQQQHQMAFGPHTSSLSHSSMAGAPSHTMIHQTMQKSASASSTKPLSSTSSPSRRNSPHSLTPLHSPLTELGLEMSFKPSRPFSPSRLFSDDISDIVGVAASPLRSPSTSHPSTATAVTTATITTTSSINPATVRSSSSEPSVSAIATAVTTATSTASAAIDSTASTTSNISSTGIKLEPITTSSD*V*NIHKSHMYTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00921367;
- 90% Identity
- iTF_01260919;
- 80% Identity
- -