Lmom006458.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- sip1
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000097.1:275291-277957[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-92 1e-88 297.6 12.8 2 275 403 673 402 673 0.98 2 2 0.036 3.3e+02 0.7 0.1 156 203 684 728 677 729 0.73
Sequence Information
- Coding Sequence
- ATGTCGGACAACGAGTACGAGCGCTTTGAGATTACGGACTATGACCTGGACAATGAGTTTAATATCAACAGGCCGCGTGGCAGGCAAAGCAAGCACCAGCAAATTTATGGTATTTGGGCGGATGACAGCGATGAGGAGAGCGGCGGTGAGACAAGCAAACGCAAAGGACGGCCAACGCGTCAGGCCAAGGACTATACAATGCCGGTTAACTTTGTGGCCGGGGGCATACAACAGGCGGGCAAGAAGAAGAAGGTGAAGAAGGCCGAAGGCGAGCCGGAGGAGGCACAAAATAGTGATGAGTCCAGTGAGAATGCGCGTCCGGCTTTCGGTGAGCTATCGGATCACTCGGCCAATTCCAGTTCGGAAGAGGAACAGACGCAAAAACCCTCTTTGGGAAGATCAAGGGATCAAACCGGCTTCAAGCATCAGTCACATATACCCAGTGAACGTCATGTGGGTGCCTGGGAGCAGCATACCAGAGGCATAGGAGCCAAATTGCTGCTACAGATGGGCTATGAGCCGGGCAGAGGATTGGGCAAGGATTTGCAGGGCATCTCACAGCCGGTGCAGGCACATGTACGCAAGGGACGCGGAGCCATAGGTGCCTATGGACCCGAAACGGCGGCCAGCATACCGGGCAAACCTAAACCTAGCATAAAAATGGATGAGGATCTGCAGGAGGCCAAGGAGTTTAAGGAGCAAATGAACAAATGGCGCAAAGGTGGAGGAGCTGCCGCCGAAGTACCCGAAAAACAGGGAAAACGTTATTACTACAAATCCGTGGAGGAAGTCATAGCCAAGGGTAAAAAATCACAACACTTGCTGTCCGAAAAGTTAAGCCAAAGATTGGGCAATGTGCCGGTTATTGATATGACGGGGCCAGAGAGGCGTGTCTTAAGTGGCTACCATGCCTTGGCTCAGACCAAGGTTTCAACGGATGAAGTGGAGGATAAGGCAGCCACGACTCCCTGTGTCTTTGCCCTGCCCGAATTGACACACAATTTGCAGCTTTTGGTCAGTCAGTGTGAACAGCAAATCATTTCCATAGACAAATCCGAGCGAGAATCCTCCAGTCAGCAGCAACAATTGGAATTTGAGTATAAGAAACTGGAGGAACTGGTACAACTGGAAAGGAATCACATTAAAACGCTGGAAGAGACCCTGGAGCGTGTGGAAAAACTGAGCGAAGATCCGGGTTTAAGTCTGGCCGAAGCGGAGCATTTATTCCTCGAGCTTTTACAGGATTATCCTATGGAATTCCAAGAATTTGGTCTGGCCGATTTGGCGGCGGGAGTTATAGCTCCATTGGTCAAGCGAGATTTGTGCTCTTGGTCACCCTTAGAGCAGCCCACGCAACCTTTGGCGCTGATTAAGAAATGGCGTGGATTTTTGCAAAAAACAGATCCAGAATCCAGTGAGCAACAGCCTCGAAATGTGTTCGATCCCTACTCCTCGCTTATTTGGGCGGGGGTAATGCCCTCATTTCGTTTAAGCGCCTCCGCCTGGTCACCCAAAGAACATGCACCCATGGCTGCCCTACTTGATGCTTGGGCTCCTTTGTTACCCACTTGGATATTGGATTCGATATTGGAACAAATTATTTTGCCACGTTTGGCGGCTGGCGTTCTGGAATGGGATCCCTTAACCGATACCGTGCCCATACACAGCTGGATCTTGCCCTGGCATGGCATTTTGGGTGCCAAATTGGAGGAATCGATTTATCCTCAAATACGTAATAAATTGGGTGTGGCTTTGCAGGCCTGGTTACCGCAAGATCGTTCGGCACGGGCCATGCTCACACCCTGGCAGCAAGCCTTTCCCGAAGACGAATTGGTGGATTTTCTGCTGCAGCATATTATACCCAAATTGCAATTGGTTTTGGGTGAATTCATTATTAATCCACTGCATCAGGATTTGGAGCTGTGGAATCAAGTGTGGGAATGGCATGAGCTGATACCACCCATGCATATGGCCCTACTGTTGGATAAGCATTTCTTTCCACGCTGGATGCAGGTCCTGGTCCTGTGGCTTAATCAATCGCCCGACTATGCTGAAATCTCTCGCTGGTATACCGGCTGGAAGAGCATGCTGAGTGAATCACTTTTACGTGAGCCCTGCATCAAGGAACATTTGCGTCGTGCCTTAGAGATGATGCATCGTGCCACAGATGCCATGTTACAGCCCACAGCAACTCCCCCGCCGCCTGTACCACCAGCGCCGGTTCTTTTGCCTCCTGTCATGCTAGTGGATGTGGCTCAACCTGCTCAGCTTGAATTTAAGGAATTGGTCTCACAGAAATGCGCCGAATTGGGCATCATATTTGCTCCTTTACCCGGCCGAAGGGAACTGGGCAAGCAGATTTATCGTGTGGGCAAACTATTCTGCTATATAGATCGCAATGTTTGCATGCTAAGCGATAGCAGCTTCAGCAATTGGCAACCGGTGGCTCTCAATCAACTGCTGGAACGCTCACAAACGGGAATTGTCTAG
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNINRPRGRQSKHQQIYGIWADDSDEESGGETSKRKGRPTRQAKDYTMPVNFVAGGIQQAGKKKKVKKAEGEPEEAQNSDESSENARPAFGELSDHSANSSSEEEQTQKPSLGRSRDQTGFKHQSHIPSERHVGAWEQHTRGIGAKLLLQMGYEPGRGLGKDLQGISQPVQAHVRKGRGAIGAYGPETAASIPGKPKPSIKMDEDLQEAKEFKEQMNKWRKGGGAAAEVPEKQGKRYYYKSVEEVIAKGKKSQHLLSEKLSQRLGNVPVIDMTGPERRVLSGYHALAQTKVSTDEVEDKAATTPCVFALPELTHNLQLLVSQCEQQIISIDKSERESSSQQQQLEFEYKKLEELVQLERNHIKTLEETLERVEKLSEDPGLSLAEAEHLFLELLQDYPMEFQEFGLADLAAGVIAPLVKRDLCSWSPLEQPTQPLALIKKWRGFLQKTDPESSEQQPRNVFDPYSSLIWAGVMPSFRLSASAWSPKEHAPMAALLDAWAPLLPTWILDSILEQIILPRLAAGVLEWDPLTDTVPIHSWILPWHGILGAKLEESIYPQIRNKLGVALQAWLPQDRSARAMLTPWQQAFPEDELVDFLLQHIIPKLQLVLGEFIINPLHQDLELWNQVWEWHELIPPMHMALLLDKHFFPRWMQVLVLWLNQSPDYAEISRWYTGWKSMLSESLLREPCIKEHLRRALEMMHRATDAMLQPTATPPPPVPPAPVLLPPVMLVDVAQPAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLSDSSFSNWQPVALNQLLERSQTGIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00919812; iTF_00916228; iTF_00918123; iTF_00917203; iTF_00915324; iTF_00914496; iTF_00555077; iTF_00483681; iTF_00577772; iTF_00501037; iTF_00590960; iTF_00600309; iTF_00555840; iTF_00618404; iTF_00612066; iTF_00523689; iTF_00571150; iTF_00503262; iTF_00604085;
- 90% Identity
- iTF_00915324;
- 80% Identity
- -