Lsta008178.1
Basic Information
- Insect
- Lordiphosa stackelbergi
- Gene Symbol
- sip1
- Assembly
- GCA_018904235.1
- Location
- JAEIFU010001182.1:7233-9856[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-95 1.4e-91 306.7 12.8 2 275 409 678 408 678 0.98 2 2 0.096 7.5e+02 -0.7 0.0 157 202 690 732 683 733 0.64
Sequence Information
- Coding Sequence
- ATGTCGGACAACGAATACGAGCGCTTCGAGATCACCGACTATGACCTGGACAATGAATTCAATATCAACAGACCGCGCGGCAGACAGAGCAAGCATCAGCAAATCTATGGAATTTGGGCGGATGACAGCGATGAGGAGAGCGGCGGTGAGACAAGCAAAAGCAAACGCAAAGGACGTGCCACGCGTCAGCCCAAGGACTATACAATGCCTGTGAACTTTGTGGCCGGGGGCATCCAACAGGCGGGCAAGAAGAAGACCAAGAACAAGGAAGAAGATGATCAGGGGGAGGAGGCACAACAATATAGCGACGAGTCCGATGAGAATGCACGTCCAGCTTTCGGTGAGCTGTCCGATAATTCTGCCAATTCCACTTCGGAGGAGGAGCAGGAGCAAAAACCCTCGCTGGGCAGAATGAAGGCCCAAACCGGCTTCAAGCATCAATCGCATATACCCAGCGAACGGCATGTGGGTGCCTGGGAGCAGCATACCAAAGGCATAGGAGCCAAATTGCTGCTACAGATGGGCTATGAGCCTGGCAAGGGATTGGGCAAGGACTTGCAGGGCATCTCCCAGCCGGTGCAGGCACATGTACGCAAAGGACGTGGAGCCATAGGAGCCTATGGTCCCGAAACGGCGGCCAGCATACCAGGCAAACCCAAACCCAGCCTAAAAATGGACGAAGATCTGCAGGAGGCCAAGGAATTCAAAGAGCAAATGAACAAATGGCGAAAGGGAGGAGCGGCAGCAGACGTCCCGGAGAAACAGGGCAAACGTTATTATTACAAATCCGTGGAGGAAGTCATAGCCAAAGGCAAGAAATCCCAACACTTGCTCTCCGAAAAGTTGAGCCAAAAATTGGGCAATGTGCCGGTAATTGATATGACGGGGCCAGAGAAGCGAGTGTTAAGTGGTTACCATGCCTTGGGCCAGACCAAAATATCAACGGATGAAGTGGAGGACAAGTCTTCAGGAGCAGCCAGTGCTCCCTGTGTCTTTGCCTTGCCCGAACTGACGCACAACCTGCAGCTTTTGGTCAGCCAATGTGAACAGCAAATCATTTCCATAGACAAATCCGAGCGAGAATCCTCCAGCCAGCAGCAGCAATTGGAGTTTGAGTATAAGAAACTTGATGAACTGGTCCAACTGGAAAGGAATCACATTAAAACGCTGGAAGAGGCCTTGGAGCGTGTGGAGAAACTCAGTGAGGATCCCGATTTAAGTCTAACGGAGGCGGAGCATTTATTCCTCGAGCTGCAGCATGATTATGCTTCGGAGTTCCAGGAATTTGGTTTGGCAGATTTAGCTGCAGGTGTGATAGCGCCGCTGGTCAAGCGAGATCTCTCCTCGTGGTCACCGCTAGAGCAGCCCACCCAACCGTTGGCCCTGATCAAGAAATGGCGTGGATTTCTGCAAAAGACAGATGAATCGGCAGAGCAGCAAACTCGTAATGTCTTCGATCCCTATTCCTCGCTTATTTGGGCGGGTGTTATGCCCTCATTTCGTTCATGCGCCTCCTCCTGGTCACCCAAAGAACACGCACCCATGGCTGCCCTACTCGATGCTTGGGCTCCACTGTTGCCCACTTGGATTTTGGACTCGATATTGGAACAAATAATTTTGCCCCGTTTGGCGGCTGGCGTTCTAGAATGGGATCCCCTAACCGACACCGTGCCCATACACAGCTGGATATTGCCTTGGCATGGGATTTTGGGTGCCAAACTGGAGGAATCAATTTATCCTCAAATACGTAATAAACTGGGGGTGGCCCTACAGGCCTGGCTACCGCAAGATCGTTCCGCCCGAGCCATGCTTACACCCTGGCAGCAAGCCTTTCCCGAAGAGGAATTGGTGGACTTTCTACTGCAGCATATTATACCCAAATTGCAGTTGGTACTCGGTGAATTCATTATTAATCCCCTGCATCAGGATCTAGAGCTGTGGAATCAGGTGTGGGAATGGCATGAATTGATACCACCCATGCATATGGCCTTGCTGTTGGACAAGCATTTCTTTCCACGTTGGATGCAGGTTCTGGTCCTGTGGCTAAATCAATCACCCGACTATGCGGAAATCTCACGCTGGTATACCGGCTGGAAGAGCATGTTGAGTGAGCCTCTGTTACGTGAACCCTGCATTAAGGAACATTTGCGTCGTGCCCTAGAAATGATGCATCGTGCCACAGATGCCATGCTGCAACCCACAGCCACTCCTCCGCCACCAGTTCCACCAGCGCCGGTCCTTCTGCCACCCGTTATGCTAGTGGATGTGGTTCAGCCCGCTCAACTAGAGTTCAAAGAGTTGGTCTCACAGAAATGCGCCGAATTGGGCATCATATTTGCTCCTCTACCCGGTCGACGGGAACTGGGCAAGCAGATTTATCGTGTGGGCAAGCTATTTTGCTATATCGATCGCAATGTTTGCATGGTGAGCGATAGCAGCTTCAGCAACTGGCAACCGGTGGCTCTCAATCAACTGCTGGAACGCTCACAAACGGGACTCGTTTAG
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNINRPRGRQSKHQQIYGIWADDSDEESGGETSKSKRKGRATRQPKDYTMPVNFVAGGIQQAGKKKTKNKEEDDQGEEAQQYSDESDENARPAFGELSDNSANSTSEEEQEQKPSLGRMKAQTGFKHQSHIPSERHVGAWEQHTKGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPETAASIPGKPKPSLKMDEDLQEAKEFKEQMNKWRKGGAAADVPEKQGKRYYYKSVEEVIAKGKKSQHLLSEKLSQKLGNVPVIDMTGPEKRVLSGYHALGQTKISTDEVEDKSSGAASAPCVFALPELTHNLQLLVSQCEQQIISIDKSERESSSQQQQLEFEYKKLDELVQLERNHIKTLEEALERVEKLSEDPDLSLTEAEHLFLELQHDYASEFQEFGLADLAAGVIAPLVKRDLSSWSPLEQPTQPLALIKKWRGFLQKTDESAEQQTRNVFDPYSSLIWAGVMPSFRSCASSWSPKEHAPMAALLDAWAPLLPTWILDSILEQIILPRLAAGVLEWDPLTDTVPIHSWILPWHGILGAKLEESIYPQIRNKLGVALQAWLPQDRSARAMLTPWQQAFPEEELVDFLLQHIIPKLQLVLGEFIINPLHQDLELWNQVWEWHELIPPMHMALLLDKHFFPRWMQVLVLWLNQSPDYAEISRWYTGWKSMLSEPLLREPCIKEHLRRALEMMHRATDAMLQPTATPPPPVPPAPVLLPPVMLVDVVQPAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMVSDSSFSNWQPVALNQLLERSQTGLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00919049;
- 90% Identity
- iTF_00915324;
- 80% Identity
- -