Dneb002859.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila nebulosa
Gene Symbol
sip1
Assembly
GCA_018150735.1
Location
JAECWO010000077.1:148421-151142[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.2e-92 2.9e-88 296.1 15.5 1 275 418 687 418 687 0.97
2 2 0.044 3.9e+02 0.4 0.0 157 202 699 741 692 743 0.76

Sequence Information

Coding Sequence
ATGTCAGACAATGAGTATGAGCGGTTTGAGATAACCGACTATGATCTGGACAATGAATTCAATATAAACAGACCGCGGGGCAGGCAGAGCAAGCACCAGCAAATTTATGGCATTTGGGCTGATGGCGATGATAGTGAAGAGGACGAGGGAAGTCGCCCATCGCGATCCCGGACACGGGCACCCAAAGATTACACTATGCCGGTTAATTTTGTGGCCGGGGGAATCCAACAGGCAGGCAAAAAGAAGAAGAAGAAGAAGGGCAATGAAGATGGAGTCGAAGATGGTGAGAATAAGGATAAAGACGGAGATGATGGGGAAGCGGAAAACAGTGATGCATCGAGTGAAAATGCCCGCCCGGCCTTTGGGAACCAGAAAAGCTCTGATGAGTCCTCTTCGGCGGAGGAACAAAAGCCCACGATGGGGAAGATTAGAGGACAAACTGCAGGACTCAGACATCGTTCGCACATCGCCAGCGATCGTAATGTGGGAGCCTGGGAGCAACATACAAGAGGCATTGGTGCCAAATTGTTGCTCCAGATGGGCTACGAGCCGGGTAGAGGCCTGGGCAAGGATTTGCAGGGTATATCGCAGCCTGTGCAGGCGCATGTTAGAAAAGGCCGAGGAGCTATAGGTGCATATGGACCTGAGACCGCGGCCAGTGTGGGTGGAAAACCAAAACTGAGCATTAAAGTCGATGAAGATATCCAAGAGGCCAAGGAGTTCAAGGAGCAGATGAACAAATGGCGCAAAGGCGGTGCAGGTGCAGGAGTAGCAACTGAAAATTACGAAAAGTCAGGCAAACGCTACTACTACAAATCCGTGGAAGAGGTCATTGCCAAGGGCAAGAAATCCCAGCATCTGCTATCCGAGAAATTGAGCAAAAAATTGGGCAATGTTCCGGTGATTGATATGACGGGACCAGAGAAACGTGTTCTCAGTGGCTATCATGCATTGGGTCAGGTGAAAGTTGCCATCGATGACGTCGAGGAGAAAGTAAGTGGCTCATCCACTGGAATGTCGGTCTTTGCCATGCCGGAATTGACTCACAACTTGCAGCTGTTGGTCAGCCAATGCGAACAGCAGATTATAGCGATAGACAAGTCCGAGCGAGAGTCCTCCAGCCAGCAACAGGCCTTGGAAATTGAATATAAACATCTCGAGGAGATAGTCCACCTGGAAAGGAATCACATTAAGACGCTTGAGGAGGCTTTAGAAAGAGTGGACAAGCTGTGTGAAGATCCCGGCATAAGTCTGTCGCAGGCAGAACACCTATTCCTCGAACTAATCCATGATTATTCATCAGAATTTAAGGAATTTGGTCTCGCGGACTTGGCTGCCGGCGTTATAGCTCCCCTGGTGAAGAGGGAACTAGCCAGCTGGCAACCGTTGGAGCAGCCCACCAAGCCCCTGCAGCTGATCAAGAAATGGCGTAGCATGCTCCAGCATGAGGATCTAATCGAGCAAAAGTCACGTAATGTCTTTGACCCGTATTCCTCATTGATTTGGGCCGGGGTGATGCCATCATTTCGCTTATGTGCCGCCAATTGGCCACCGAAGGATTACTCCCCCATGGCTGCTCTACTCGATGCCTGGGCTCCCTTGATGCCCACTTGGGTGCTGGATTCTGTGTTGGAGCAACTTATCCTACCACGACTGGCCAAAGGGGTACAGGAATGGGATCCCCTGACAGACACAGTTCCGATTCACAGTTGGGTGTTACCTTGGCATGGAATTTTGGGTCCCAAACTGGAAGAATCAATATATCCCCAGATCAGAAGCAAACTAGGAGCTGCCCTGCAGTCCTGGTCGCCACAGGATCGTTCGGCCCGAGCTATGCTAACACCCTGGCAACAGGCATTTCCCGAAGATGAATTGGTCCATTTTCTATTGCTTCATATTATACCCAAATTGCAAATTGTTCTCGGTGAATTCATTATCAATCCTTTGCATCAGGATCTGGAAATGTGGCATCAGGTTTGGGAATGGCATGAGTTGATACCACCCATGCATATGGCCAATCTATTGGATAAGCATTTCTTTCCACGCTGGATGCAGGTTCTGGTTTTATGGTTAAATCAATCGCCAGACTATGGGGAAATCTCTCGCTGGTATACCGGTTGGAAGAGCATGCTGAGTGAAGCACTACTGCGTGAACCCTCTATCAAGGAGCATCTAAGACGTGCTCTGGAAATGATGCATCGTGCCACAGATGCCCTGCTGCAACCAGCAACGGCCACACCACCGCCCCCCGTACCACCAGCACCGCCAGCTGCTGCTGTTCTCTTGCCGCCTGTTATGCTCATGGATCAGCCCGCTCAACTGGAATTCAAAGAGTTGGTCTCACAGAAATGTGCCGAACTGGGCATCATTTTCGCTCCCCTTCCGGGTCGTCGGGAATTGGGCAAGCAGATTTATCGTGTGGGCAAACTATTTTGCTATATCGATCGGAATGTTTGCATGCTGAGCGACGGCAACTTCAGCAATTGGCAGCCAATGGGCCTCAACCAGATGTTGGAACGCTCACAAACAGGAGTACTTTAG
Protein Sequence
MSDNEYERFEITDYDLDNEFNINRPRGRQSKHQQIYGIWADGDDSEEDEGSRPSRSRTRAPKDYTMPVNFVAGGIQQAGKKKKKKKGNEDGVEDGENKDKDGDDGEAENSDASSENARPAFGNQKSSDESSSAEEQKPTMGKIRGQTAGLRHRSHIASDRNVGAWEQHTRGIGAKLLLQMGYEPGRGLGKDLQGISQPVQAHVRKGRGAIGAYGPETAASVGGKPKLSIKVDEDIQEAKEFKEQMNKWRKGGAGAGVATENYEKSGKRYYYKSVEEVIAKGKKSQHLLSEKLSKKLGNVPVIDMTGPEKRVLSGYHALGQVKVAIDDVEEKVSGSSTGMSVFAMPELTHNLQLLVSQCEQQIIAIDKSERESSSQQQALEIEYKHLEEIVHLERNHIKTLEEALERVDKLCEDPGISLSQAEHLFLELIHDYSSEFKEFGLADLAAGVIAPLVKRELASWQPLEQPTKPLQLIKKWRSMLQHEDLIEQKSRNVFDPYSSLIWAGVMPSFRLCAANWPPKDYSPMAALLDAWAPLMPTWVLDSVLEQLILPRLAKGVQEWDPLTDTVPIHSWVLPWHGILGPKLEESIYPQIRSKLGAALQSWSPQDRSARAMLTPWQQAFPEDELVHFLLLHIIPKLQIVLGEFIINPLHQDLEMWHQVWEWHELIPPMHMANLLDKHFFPRWMQVLVLWLNQSPDYGEISRWYTGWKSMLSEALLREPSIKEHLRRALEMMHRATDALLQPATATPPPPVPPAPPAAAVLLPPVMLMDQPAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLSDGNFSNWQPMGLNQMLERSQTGVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00919049;
90% Identity
iTF_00523689;
80% Identity
-