Lcol008809.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa collinella
Gene Symbol
sip1
Assembly
GCA_018904265.1
Location
JAEIFV010000231.1:388607-396078[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.8e-95 6.1e-91 305.0 12.5 1 275 405 675 405 675 0.99
2 2 0.096 1e+03 -0.7 0.0 157 202 687 729 680 730 0.64

Sequence Information

Coding Sequence
ATGTCGGACAACGAATACGAGCGCTTTGAGATCACCGACTATGATCTGGACAATGAGTTCAATATCAACCGACCGCGAGGAAGGCCGAGCAAGCACCAGCAAATATATGGAATTTGGGCGGATGACAGCGATGAGGAGAGCGGCGGTGAGACAAGCAAACGCAAAGGTGGGCGAGGTGCAGCGCGTCAGGCCAAGGATTACACGATGCCGGTGAACTTTGTGGCCGGGGGGATCCAACAGGCGGGCAAGAAAAAGAAGAAGAAGGGAGAGGCTCTGACAGAAGGAGACCAGGAGGAGGCACAAAACAGCGATGCGTCCAGTGAGAATGCACGTCCTGCCTTTGGCGAGTTATCGGATAACTCGGCCAATTCCAGTTCGGAGGAGGAGCAAGAGCTGAAACCCAGAATGCAGGCACAAACCGGCTTCAAGCATCAATCGCACATACCCAGCGAACGTCATGTGGGCGCCTGGGAGCAGCATACCAAGGGCATAGGAGCCAAGTTGCTGTTACAAATGGGCTATGAGCCAGGCAAGGGCTTGGGCAAGGATTTGCAGGGCATCTCCCAGCCGGTGCAGGCGCATGTACGCAAAGGACGTGGAGCCATAGGTGCCTATGGTCCCGAAACGGCCGCCAGCATACCGGGCAAACCCAAACCCAGCCTCAAAATGGATGAGGATCTGCAGGAGGCCAAGGAATTTAAGGAGCAAATGAACAAATGGCGGAAGGGAGGAGCTGGGGCTGGAGCAGCAGAAGTGCCCGAAAAACAGGGCAAACGTTATTATTACAAATCGGTGGAGGAGGTCATAGCCAAGGGTAAGAAATCCCAACACCTGCTCTCCGAAAAGCTAAGCCAAAGATTGGGCAATGTGCCGGTCATTGATATGACGGGGCCAGAAAAACGTGTGTTAAGCGGTTATCATGCCCTGGGCCAGACCAAAATCACCACAGACGAAGTGGAGGATAAGTCAACGGCGCCATGTCTGTTTGCCCTGCCCGAGCTCACACACAATTTGCAGCTATTGGTCAGCCAATGTGAACAGCAAATCATTTCCATAGACAAATCCGAGCGAGAATCCTCCAGCCAGCAGCAGCAATTGGAATTTGAGTACAAAAAACTGGATGAGCTGGTTCAGCTGGAGCGAAATCACATTAAAACACTGGAGGAGGCCTTGGAGCGTGTGGAGAAACTGAGTGAAGATCCCGCCTTAAGTCTGTCAGAGGCAGAGCATTTATTCCTCGAGCTGCTGCATGATTATCCTTCGGAATTCCAGGAATTTGGCTTGGCAGACTTGGCTGCAGGTGTTATCGCTCCCCTAGTCAAGCGAGATCTCTCCTCTTGGTTACCTCTCGAGCAGCCTACCCAACCATTGGCTTTGATTAAGAAATGGCGAGGATTTCTACAAAAAACCGATGAATCTGCAGAACAGCAGCCGCGTAATGTCTTCGATCCCTATTCTTCGCTTATCTGGGCTGGTGTCATGCCCTCATTTCGTTCGTGCGCCTCCTCCTGGTCACCCAAAGAACACGCGCCCATGGCTGCTCTACTGGATGCTTGGGCTCCACTGTTACCCACTTGGATTTTGGATTCCATATTGGAACAAATTATATTACCACGTTTGGCCGCTGGCGTACTCGAATGGGATCCGTTAACCGATACGGTGCCCATACACAGCTGGATACTGCCTTGGCATGGCATTCTGGGTGCCAAATTGGAGGAATCCATTTATCCCCAGATACGTAGTAAATTGGGTGTTGCCCTGCAGGCCTGGTCACCGCAAGATCGTTCGGCCAGGGCTATGCTTACACCCTGGCAGCAAGCCTTTCCCGAAGAGGAACTGGTGGACTTTCTGCTGCAGCATATTATACCCAAATTGCAGTTGGTACTCGGCGAATTCATTATTAATCCCCTACATCAGGATCTGGAGCTGTGGAATCAGGTGTGGGAATGGCATGAATTGATACCACCCATGCATATGGCCATGCTGTTGGACAAGCATTTCTTTCCACGTTGGATGCAGGTTCTGGTCCTCTGGCTTAATCAATCACCCGACTATGCGGAAATCTCTCGCTGGTATACCGGCTGGAAGAGCATGCTGAGTGAACCTCTCTTACGTGAGCCCTGCATCAAAGAACATTTGCGTCGTGCTTTAGAGATGATGCATCGTGCCACAGACGCCATGCTACAACCCACAGCTACTCCTCCACCACCAGTTCCACCAGCACCAGTCCTGCTGCCACCCGTTATGCTAGTGGATGTGGCTCAGCCAGCTCAGCTAGAGTTTAAGGAGTTGGTCTCACAGAAATGCGCTGAATTAGGCATCATATTTGCTCCTCTACCTGGACGACGGGAACTGGGCAAACAGATTTATCGTGTGGGCAAGCTGTTTTGCTATATTGATCGCAATGTTTGTATGCTCAGCGATAGCAGCTTTAGCAATTGGCAACCGGTGGCTCTCAACCAACTGCTGGAACGCTCACAAACCGGAATGGTTTAG
Protein Sequence
MSDNEYERFEITDYDLDNEFNINRPRGRPSKHQQIYGIWADDSDEESGGETSKRKGGRGAARQAKDYTMPVNFVAGGIQQAGKKKKKKGEALTEGDQEEAQNSDASSENARPAFGELSDNSANSSSEEEQELKPRMQAQTGFKHQSHIPSERHVGAWEQHTKGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPETAASIPGKPKPSLKMDEDLQEAKEFKEQMNKWRKGGAGAGAAEVPEKQGKRYYYKSVEEVIAKGKKSQHLLSEKLSQRLGNVPVIDMTGPEKRVLSGYHALGQTKITTDEVEDKSTAPCLFALPELTHNLQLLVSQCEQQIISIDKSERESSSQQQQLEFEYKKLDELVQLERNHIKTLEEALERVEKLSEDPALSLSEAEHLFLELLHDYPSEFQEFGLADLAAGVIAPLVKRDLSSWLPLEQPTQPLALIKKWRGFLQKTDESAEQQPRNVFDPYSSLIWAGVMPSFRSCASSWSPKEHAPMAALLDAWAPLLPTWILDSILEQIILPRLAAGVLEWDPLTDTVPIHSWILPWHGILGAKLEESIYPQIRSKLGVALQAWSPQDRSARAMLTPWQQAFPEEELVDFLLQHIIPKLQLVLGEFIINPLHQDLELWNQVWEWHELIPPMHMAMLLDKHFFPRWMQVLVLWLNQSPDYAEISRWYTGWKSMLSEPLLREPCIKEHLRRALEMMHRATDAMLQPTATPPPPVPPAPVLLPPVMLVDVAQPAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLSDSSFSNWQPVALNQLLERSQTGMV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00919049;
90% Identity
iTF_00915324;
80% Identity
-