Dneo018030.1
Basic Information
- Insect
- Drosophila neocordata
- Gene Symbol
- sip1
- Assembly
- GCA_018903615.1
- Location
- JAEIGI010000006.1:3623995-3626707[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.1e-93 7.7e-89 298.0 15.2 2 275 414 682 413 682 0.98 2 2 0.064 6.1e+02 -0.1 0.0 157 203 694 737 687 738 0.73
Sequence Information
- Coding Sequence
- ATGTCGGACAATGAATATGAGCGATTTGAAATTACTGACTATGATTTGGACAATGAATTTAATATAAACCGACCGCGAGGCAGGCAGAGCAAGCACCAGCAAATTTATGGCATTTGGGCAGATGGGGATGACAGTGAAGAGGATGAGGGTAGTCGCGCATCCCGTTCCCGCACTCGGGCACCCAAGGATTACACTATGCCTGTTAATTTTGTGGCCGGTGGAATCCAACAAGCGGGCAAGAAGAAGAAGAATAAGGGCATAGAGGACAGCGGCAAAGCTGAGGATAAGGATAAAGAAGACATTGAGGAAGTGGAAAACAGTGATGCATCTAGTGAAAATGACCGTCCCGCTTTTGGAAATCAGAAGAGCACCGATGACTCTTCATCGGAGGAGGAACAGAAGCCCAAGATGGGCAAGGTTACAGGACAAACTGCTGGACTAAGACATCGCTCTCACATAGCCAGCGATCGTAATGTCGGAGCCTGGGAGCAACATACTAGAGGCATAGGCGCTAAACTCTTGCTTCAAATGGGCTATGAGCCGGGCAAGGGTCTGGGCAAAGACTTGCAGGGTATATCCCAGCCAGTTCAGGCGCACGTAAGAAAAGGTCGCGGAGCTATTGGCGCCTACGGCCCCGAGATAGCAGCCAGTATTGGCGGAAAAGGCAAGCCCAGCTTAAAAGTAGACGAAGATGTGCAAGAGGCCAAAGATTTTAAAGATCAGATGAACAAATGGCGTAAAGGTGGTGCCGGCGCTGGATCAGAAAGTCACGAAAAGTCCGGCAAACGCTACTACTATAAATCTGTGGAGGAGGTCATAGCAAAGGGCAAAAAATCCCAGCATTTGTTGTCCGAGAAATTGAGCAAAAAATTGGGCAACGTTCCAGTTATTGATATGACAGGACCTGAAAAGCGAGTTCTTAGTGGTTATCATGCATTAGGACAGGTCAAAGTAGCCACCGACGACACGGAAGAAAAAATAGGTGGATCAGGAAGTGGGGTCTCGGTCTTTGCTATGCCAGAATTGACTCACAACTTGCAACTTTTGGTCAGTCAATGCGAACAACAGATCATATCAATAGATAAATCTGAGCGAGAATCCTCGAGTCAGCAACAGGCTTTGGAAATTGAATATAAACATCTACAAGAGATTGTCCAACTTGAAAGGAACCATATAAAGACTCTTGAAGAGGCATTGGAACGGGTGGAAAAGCTGACTGACGATCCCGACATAAGTCTAACACAGGCGGAACACTTATTCCTTGAACTAATCCATGATTATCCATCAGAATTCAAGGAATTCGGACTAGCCGACCTAGCTGCTGGTGTAATTGCACCGCTCATGAAGAGGGAATTGGCCAGCTGGCAACCCTTGGAGCAGCCAACGAAACCCCTGCAACTGATTAAGAAGTGGCGCAGTATGCTCCAGCATGAGGATCTCAATGAACAAAAGACACGTAATGTCTTTGATCCTTATTCCTCATTAATCTGGGCAGGAGTGATGCCATCATTTCGTGCATGTGCCTCCAGTTGGCCGCCAAAAGATTATTCTCCCATGGCTGCTCTACTTGATGCATGGGCCCCATTAATGCCAACCTGGGTGCTCGATTCGGTTTTAGAGCAACTAATTTTACCACGACTAGCCAAAGGTGTTCAAGATTGGGATCCCCTGACCGATACGGTCCCCATACATAGCTGGATATTACCTTGGCATAACATTCTAGGACCTAAACTCGAAGAATCAATATATCCACAGATTAGAGGAAAACTGGGTGCTGCCCTGCAATCCTGGTCGCCACAGGATCGCTCCGCCAGGGCCATGTTAACACCCTGGCAACAGGCATTCCCTGAAGATGAATTAGTCCATTTTCTTTTACTACATATAATACCCAAATTGCAAATTGTTTTGGGTGAATTCATTATCAATCCTTTGCATCAAGATCTTGAAATGTGGCATCAAGTTTGGGAGTGGCATGAGTTGATACCACCCATGCATATGGCCAATCTGTTGGACAAGCATTTCTTTCCACGATGGATGCAGGTTCTAGTCTTATGGTTAAATCAATCTCCTGATTATGCAGAAATCTCACGCTGGTATACCGGCTGGAAGAGTATGCTGAGTGAACCACTTTTGCGGGAACCATCAGTAAAGGAGCATCTACGTCGTGCCTTGGAAATGATGCATCGTGCTACAGATGCCATGCTGCAACCGACAACAGCCACGCCACCTCCCCCTGTACCACCAGCACCGCCAAGTAATGTGCTTTTGCCGCCCGTGATGATCATGGATATGACACAACCCGCTCAACTGGAATTTAAGGAGTTGGTCTCACAGAAATGTTCCGAATTGGGCATCATATTTGCCCCCTTACCTGGTCGTCGTGAAATGGGTAAACAGATTTACCGTGTAGGCAAACTTTTTTGCTATATTGATCGGAATGTTTGCATGTTAAGCGACGGAAATTTTAGCAATTGGCAGCCAGTGGCCCTTAATCAGTTGTTGGAACGTTCACAAACTGGAATAATGTAG
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNINRPRGRQSKHQQIYGIWADGDDSEEDEGSRASRSRTRAPKDYTMPVNFVAGGIQQAGKKKKNKGIEDSGKAEDKDKEDIEEVENSDASSENDRPAFGNQKSTDDSSSEEEQKPKMGKVTGQTAGLRHRSHIASDRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPEIAASIGGKGKPSLKVDEDVQEAKDFKDQMNKWRKGGAGAGSESHEKSGKRYYYKSVEEVIAKGKKSQHLLSEKLSKKLGNVPVIDMTGPEKRVLSGYHALGQVKVATDDTEEKIGGSGSGVSVFAMPELTHNLQLLVSQCEQQIISIDKSERESSSQQQALEIEYKHLQEIVQLERNHIKTLEEALERVEKLTDDPDISLTQAEHLFLELIHDYPSEFKEFGLADLAAGVIAPLMKRELASWQPLEQPTKPLQLIKKWRSMLQHEDLNEQKTRNVFDPYSSLIWAGVMPSFRACASSWPPKDYSPMAALLDAWAPLMPTWVLDSVLEQLILPRLAKGVQDWDPLTDTVPIHSWILPWHNILGPKLEESIYPQIRGKLGAALQSWSPQDRSARAMLTPWQQAFPEDELVHFLLLHIIPKLQIVLGEFIINPLHQDLEMWHQVWEWHELIPPMHMANLLDKHFFPRWMQVLVLWLNQSPDYAEISRWYTGWKSMLSEPLLREPSVKEHLRRALEMMHRATDAMLQPTTATPPPPVPPAPPSNVLLPPVMIMDMTQPAQLEFKELVSQKCSELGIIFAPLPGRREMGKQIYRVGKLFCYIDRNVCMLSDGNFSNWQPVALNQLLERSQTGIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00919049;
- 90% Identity
- iTF_00600309;
- 80% Identity
- -