Lhir010287.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375801.1:21949026-21954311[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.3e-12 1.5e-08 35.0 0.0 1 39 293 332 293 336 0.90 2 4 2.9e-13 5.1e-10 39.6 0.1 1 39 347 385 347 388 0.95 3 4 3.1e-19 5.6e-16 58.7 0.0 1 45 402 447 402 447 0.98 4 4 1.1e-16 1.9e-13 50.6 0.0 1 39 454 493 454 497 0.94
Sequence Information
- Coding Sequence
- ATGAAAAAAAAATGCGATTTAAGACGCGGTCCTGCTGTTTTAACCACAGCGTCTCTACTCCGGACAGCCGACCAGCTCAAAATCAAAGGTCTATGTGAACCGTCAGAAAACGAAAAGGAAAATTCACCAATAGATCAGCAGCAGCATCTTGCACAAAGTGTTTTAAAAATAAGAAAACCATTATCGCCTAAAAATCTTAAAAGGCAGAACAATAACAACAAGAACAAAAACAATAGATTGAGACAAACAACAGAAGATAACTGTTCAGAGAAAGAGGACAATGAGAGTCTAGAAGCTATTTCATCGGAAGAGGAAGATGATTCGGCGACAGTAAATGAACGAAAGAGAAAAAGGGCAGAGCCTGAACAAATAAAGCCACTCAACATGAGCAGTCATGGAATTATGACAGGACAAACAATTTTCTCCCAGTTTGGAGTAGATACTGATGATTTCCCTCCAGAGCCTCCGGCGCCTTCTGCCATTCCCGTTGGTCATGTGGACATGCAGGATCACTCTCCTACAAGAACACTTTTGACGAACTCTATCCATAGAACAGATCTATCCGATTCAAATGTCAAATATTGCGAAATTAAAAAAGAATCCGAAATTAAATTTGAAACTTTAAGATCTTACGATCAAGATTCATTACTTGACATGGAATCACATATGTCCGGACCAGAACATTCTATGGATAGCCATGATGACGAACAAAGCATGCACCAGATGATGGTAACTCCAGAGTTAATGGGGATGATGCCGGGGGTGTCTAATAGATTAGATTTAAGTAGTAACGAAGTACCTGCATTAAAAAATAATGGGCATACAGAAAATATACATCACACACCGAGATCACACGGTGGAGGCCCTAAAACTTGGACTCAGGAAGATATGGATATGGCCTTAGATGCTTTACGAAACCACAATATGAGCCTCACAAAAGCCTCAGCAACTTATGGTATTCCCTCCACTACATTATGGCAAAGAGCTCATAGATTAGGCATAGATACACCAAAGAAAGAAGGACCTACTAAATCATGGACTGAAGAAAATCTAAATAGTGCTTTGGAAGCGCTCAGAACTGGAACTATATCTGCAAACAAAGCGAGCAAAGCCTATGGAATACCCAGTAGTACCTTGTACAAAATTGCACGTCGAGAAGGTATTCGTCTAGCAGCTCCATTTAATGCAGCGCCGACAACGTGGACTCCTGATGATCTTGAAAAAGCCTTAGAATCTATCAGATCTGGTCAAACATCAGTTCAAAAAGCCTCAACCGAGTTTGGAATTCCCACAGGCACACTGTACGGTCGGTGTAAGCGGGAAGGTATAGAGCTTTCGAGATCGAATCCCACACCTTGGTCTGAAGATGCAATGGGAGAAGCGTTAGAAGCTGTCAGATTGGGTCATATGTCGATAAATCAAGCTGCCATACATTACAACCTGCCTTATTCATCTCTGTATGGAAGATTTAAAAGAGGCATAAAATATGATTCGGATAATATAGAGCCGAATTCAGACAGTCAGTCTCATATGGACTTCGGAATGGAATACTCCAACACCCACCAACAAATTCAATACCAAAATCAAACGAACAGCTGA
- Protein Sequence
- MKKKCDLRRGPAVLTTASLLRTADQLKIKGLCEPSENEKENSPIDQQQHLAQSVLKIRKPLSPKNLKRQNNNNKNKNNRLRQTTEDNCSEKEDNESLEAISSEEEDDSATVNERKRKRAEPEQIKPLNMSSHGIMTGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMQDHSPTRTLLTNSIHRTDLSDSNVKYCEIKKESEIKFETLRSYDQDSLLDMESHMSGPEHSMDSHDDEQSMHQMMVTPELMGMMPGVSNRLDLSSNEVPALKNNGHTENIHHTPRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEPNSDSQSHMDFGMEYSNTHQQIQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415235; iTF_00752868; iTF_00414981; iTF_00753098; iTF_01278291; iTF_01277604; iTF_01567743; iTF_01567742; iTF_01329704; iTF_00870479; iTF_00870702; iTF_00639453; iTF_00639668;
- 90% Identity
- -
- 80% Identity
- -