Zmor018436.2
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000008.1:16667955-16687444[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.8e-11 2.1e-08 34.9 0.0 1 39 296 335 296 339 0.90 2 4 1.3e-12 7.2e-10 39.6 0.1 1 39 350 388 350 391 0.95 3 4 1.7e-18 9e-16 58.5 0.0 1 45 405 450 405 450 0.98 4 4 4.7e-16 2.5e-13 50.7 0.0 1 39 457 496 457 500 0.93
Sequence Information
- Coding Sequence
- ATGAAAGTAGCCATCTGCGGAATGGACCCTATTACAGTACTTCCTCAGGTCAACACTGTCCCCTTTCAGTCACTCCTCCGCACGGCCGACCAACTGAAGATCAAAGGCCTCTGTGAACCGCCCGACGAAAAGGAAAACTCGCCCAACGACCCGCAGTACATCGCCAAAGCCTACTCCAAAGTCAGAAAACCGTCGTCACCTAAGCACTTCAAAACACAAGACAATAACAAAAGACAGAGGAGAAAGGTGCACTTGGACAATACTTCAGATAACGACGATAATGAGAGCTTGAACGGGAACTCTTCGGAGGAGGAAAATGATATGCCAGTGGGTTTAAATGAGCCTAAAAGAAAGAGGGCCGAGCCTGCGGAACAAATAAAACCACTCAACATGAGCAGTCATGGGATTATGACCGGGCAGCAGACGATCTTCTCTCAGTTCGGAGTAGACACAGATGACTTCCCCCCGGAGCCTCCAGCGCCTTCCGCGATTCCGGTGGGGCACGTGGAGATGCAGGACCACTCGCCGACGCGGACGCTCCTCACCAACACGATCCACCGGACGGACCTGTCAGACTCCAACGTCAAGTTCATCGATATCAAAAAGGAGGCCGACATCAAGTTCGAGACGTTGCGCTCGTACGACCAGGACTCGCTGCTGGAGATGGAGTCGCACATGTCGGGGCCGGACCACTCCATGGACAGCCACGAGGACGACCAGAGCATGCACCAGATGATGGTCACGCCGGAACTGATGAGCATGATGCCGAGCGTTTCAAATAGATTAGATGTAAGTAGCAACGAAGTACCTGCACTAAAAAACAACGGGCATTCGGAGAGCATACACCACCCGACGCGTTCACACGGGGGTGGTCCGAAAACCTGGACTCAGGAAGACATGGATATGGCCTTAGATGCTTTAAGAAATCATAATATGAGCCTAACAAAAGCTTCAGCAACTTACGGTATTCCCTCCACCACGCTGTGGCAGCGTGCGCATAGACTAGGTATAGACACTCCAAAGAAAGAAGGCCCTACGAAGTCCTGGACCGAAGAGAACCTCAACAGTGCCCTCGAGGCCCTGCGAACCGGGACAATATCGGCGAACAAAGCCAGCAAAGCGTACGGTATCCCCAGCAGCACCTTGTACAAAATAGCCCGACGCGAAGGCATCCGGCTGGCGGCGCCCTTCAACGCCGCCCCCACGACGTGGACGCCCGAGGACCTCGAGAAGGCGCTGGAGTCCATCCGCTCGGGGCAGACGTCCGTGCAGAAGGCCTCCACCGAGTTCGGCATCCCCACGGGGACGCTGTACGGCAGGTGCAAGCGGGAGGGCATCGAGCTGTCGAGGTCCAACCCGACGCCGTGGTCGGAGGACGCGATGGGGGAGGCGCTGGAGGCCGTGAGGCTGGGCCACATGTCGATAAATCAAGCTGCCATACACTACAACCTGCCTTATTCCTCCCTGTACGGCAGATTTAAGAGAGGCATCAAGTACGAGTCGGACAACATCGAGCCCAACTCGGACAGTCAGTCCCAGATGGAGAGTCAACACTTCGGCATGGAGTACGCAAACACCCATCAACAAGTCCAATATCAGAATCAGACGAATAGCTGA
- Protein Sequence
- MKVAICGMDPITVLPQVNTVPFQSLLRTADQLKIKGLCEPPDEKENSPNDPQYIAKAYSKVRKPSSPKHFKTQDNNKRQRRKVHLDNTSDNDDNESLNGNSSEEENDMPVGLNEPKRKRAEPAEQIKPLNMSSHGIMTGQQTIFSQFGVDTDDFPPEPPAPSAIPVGHVEMQDHSPTRTLLTNTIHRTDLSDSNVKFIDIKKEADIKFETLRSYDQDSLLEMESHMSGPDHSMDSHEDDQSMHQMMVTPELMSMMPSVSNRLDVSSNEVPALKNNGHSESIHHPTRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESDNIEPNSDSQSQMESQHFGMEYANTHQQVQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852594;
- 90% Identity
- iTF_01567743;
- 80% Identity
- iTF_01567743;