Lory001563.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- bab1
- Assembly
- GCA_030157265.1
- Location
- CM058048.1:22207852-22215323[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-11 1e-08 34.7 0.0 1 39 372 411 372 415 0.90 2 4 4.7e-13 3.5e-10 39.4 0.1 1 39 426 464 426 467 0.95 3 4 6e-19 4.4e-16 58.2 0.0 1 45 481 526 481 526 0.98 4 4 1.6e-16 1.2e-13 50.4 0.0 1 39 533 572 533 576 0.93
Sequence Information
- Coding Sequence
- ATGTCTGGCCAACACTATTGTCTACGATGGAACAATTACCAGAGTAACATGACTTCCGTTTTTCATCAACTGTTACAGAACGAAGCATTTGTAGATGTCACGTTGGCATGTAACGACTTATCTCTCAAAGCTCACAAGGTGGTTCTCTCAGCGTGCTCTTCATATTTCCAAAAACTTCTTCTTGAAAACCCATGCAAGCATCCAACGATAATAATGCCGTCTGACGTCTGTTACGCCGACCTGAAATTCATCATCGAATTTGTCTACAAAGGAGAAATCGACGTTTCCCAGACCGAATTGCAGTCACTTCTCCGCACGGCCGACCAACTAAAAATCAAAGGTCTTTGTGAATCACCTGATGAAATAGAAAACCCTCCAACTGAACCACAGTATTTCACAAAAGTTAGAAAGTCTCCGAAACATTTCAAAACACAAGACAATAACAAAAGACACAAACCAAAAAAACCACATTTAGATAATATAGGATCGGATAAAGAAGACAATGAAAGCGTGAACGGATATTCTACGgaagaagaaaatgaaatgCCAGCAGCTTTAAATGaacacaaaagaaaaaaagtagAGCCTGAGCAAGTAAAACCGCTCAACATGAGCAGTCATGGTATTATGGCCGGGCAGCAAACGATCTTCTCTCAGTTTGGAGTAGACACCGATGACTTCCCTCCAGAACCTCCGGCACCTTCGGCCATCCCCGTGGGTCATGTGGAGATGCAAGACCATTCACCAACACGCACCCTCCTCACTAATACCATCCACAGGACGGATCTTTCAGATTCCAACGTCAAATACTGCGATATCAAGAAAGAAAGCGACATCACTGACATTAAATTTGAGACGCTGCGGTCTTACGACCAAGACTCTCTTTTGGAAATGGATTCACACATGTCAGGACCTGATCATTCAATGGACAGTCACGACGACGATCAAAGTATGCATCGGATGATGGTGACACCAGAACTTATGGACATGATGCCCAGCGTTTCAAATCGATTAGATGTAAGTAGCAACGAAGTACCTGCTGTAAAAAACAATGGCCACAATGAATCTATACATCATCCGTCTAGATCTCATGGCGGCGGCCCAAAAACCTGGACTCAGGAAGACATGGATATGGCCTTAGACGCTTTAAGAAATCACAATATGAGCCtaacaaaagCTTCAGCAACGTATGGTATTCCCTCCACTACATTATGGCAACGTGCACATAGATTAGGTATAGATACGCCAAAGAAAGAAGGTCCAACAAAGTCGTGGACTGAAGAAAATCTCAATAGCGCTCTCGAAGCACTCCGGACTGGTACGATTTCAGCAAATAAAGCGAGTAAAGCTTACGGTATTCCCAGCAGTACTCTGTATAAAATAGCTCGTCGTGAAGGTATTCGTTTAGCGGCACCTTTTAATGCAGCTCCGACAACTTGGACACCGGAGGATCTTGAAAAAGCATTGGAATCGATAAGATCCGGACAGACGTCTGTGCAGAAAGCCTCAACGGAGTTTGGGATTCCCACAGGAACGCTCTACGGTCGATGTAAACGTGAAGGAATTGAGTTGTCGCGATCAAATCCGACGCCTTGGTCTGAAGATGCCATGGGTGAAGCCTTAGAAGCCGTGAGgttGGGTCATATGTCTATTAATCAAGCTGCCATTCACTACAATCTGCCTTACTCGTCATTGTATGGCAGATTTAAAAGAGGTATTAAGTATGAATCGGACAATATTGAGCCTAATTCAGACAGCCAGTCTCAAATGGACAGTCACAATTTTTCCATGGACTATCCAAACTCCCACCAACAAGTccaatatcaaaatcaaacGAATAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPSDVCYADLKFIIEFVYKGEIDVSQTELQSLLRTADQLKIKGLCESPDEIENPPTEPQYFTKVRKSPKHFKTQDNNKRHKPKKPHLDNIGSDKEDNESVNGYSTEEENEMPAALNEHKRKKVEPEQVKPLNMSSHGIMAGQQTIFSQFGVDTDDFPPEPPAPSAIPVGHVEMQDHSPTRTLLTNTIHRTDLSDSNVKYCDIKKESDITDIKFETLRSYDQDSLLEMDSHMSGPDHSMDSHDDDQSMHRMMVTPELMDMMPSVSNRLDVSSNEVPAVKNNGHNESIHHPSRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESDNIEPNSDSQSQMDSHNFSMDYPNSHQQVQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852594;
- 90% Identity
- iTF_00414981;
- 80% Identity
- iTF_00870702;