Spec004338.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638203.1:18725743-18729672[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-11 1.1e-08 34.8 0.0 1 39 334 373 334 377 0.90 2 4 3.8e-12 2.6e-09 36.8 0.1 1 39 388 426 388 429 0.95 3 4 6.9e-19 4.7e-16 58.4 0.0 1 45 443 488 443 488 0.98 4 4 1.9e-16 1.3e-13 50.5 0.0 1 39 495 534 495 538 0.93
Sequence Information
- Coding Sequence
- ATGAGGGCTTACGAGTGTTGTGCGGTGTTTCCCCAGTTGCAGACGATCCCCGGACTAATCCGGAGGGTTGCCTGGCGAGCGGCACTCGGCTTTGGGCTCCGGGGCACGCACTGGGGGAAAGTGATGCGGTGTCTGGACCAATCAATACCGGGTTCAAGGACGGCTCCTCTTATGTGTTCTTTGCTGCGGACGGCCGACCAGTTGAAGATCAAGGGCCTTTGCGAGCCTTCCGACGAGAGGGAGGACTCCCCTACGCACCTATCGCCACAACTTTTCGCCAGAAGTTTGTCGAAAGTGCGAAAGTCATCATCCCCGAAGCACCTGAAACCTCAAGACAATAATAGGAGATATAATTGTAGAAAACCTCATCCAGACAATATATCGGATATATTGGATAATGGTAGCGTAGATAGTAACTCGGATGAAGAAAATGATATGCCAGAAGCTTTAAATGATCACAAAAGGAAGAGGGCGGACCCGGAACAAATAAAACCACTCAACATGAGCAGTCATGGAATTATGACGGGACAGACAATCTTCTCACAGTTTGGGGTAGACACGGACGATTTCCCTCCAGAACCGCCGGCGCCTTCAGCAATTCCCGTCGGTCATGTCGACATGCGGGACCATTCCCCCACTCGCACCCTTCTCACCAACACCATACACAGAACCGACATTTCGGATTCCAACATTAAATATTGCGACATCAAGAAAGAGGGCGATATCAAATTCGAAACGCTACGGTCCTACGACCAGGATTCCCTCCTGGAAATGGACTCGCACATGTCAGGACCCGATCATTCCATGGACAGTCACGACGACGACAAAAGTATGCATACGATGATGGTCACTCCAGAACTGATGGGCATGATGCCCGGCGTTTCAAATAGATTAGATTTAAGTAGTAACGAAGTACCTGTATTAATAAAGAATAACGATGGGCATTCGGAGAATGTGCATCACACACCAAGGTCGCATGGTGGTGGCCCTAAAACATGGACTCAGGAAGACATGGACATGGCCTTAGATGCTTTAAGAAATCACAACATGAGCCTAACTAAAGCTTCGGCGACTTACGGTATTCCCTCCACTACTCTATGGCAAAGAGCGCATAGGCTAGGAATAGATACACCAAAGAAAGAAGGACCCACAAAGTCGTGGACCGAGGAAAACTTGAACAGTGCTCTAGATGCGCTGCGAACTGGAACTATATCAGCGAACAAAGCCAGCAAAGCTTTCGGAATTCCGAGCAGCACCCTGTACAAAATAGCGCGACGAGAAGGGATCCGGTTGGCGGCGCCATTTAACGCCGCTCCGACGACGTGGACGCCGGAGGACCTAGAAAAGGCGCTGGAATCCATCAGGTCCGGCCAAACATCAGTACAAAAAGCGTCCACCGAATTCGGCATTCCCACAGGAACTCTTTATGGCAGATGTAAAAGAGAGGGGATCGAATTGTCGCGATCGAACCCCACCCCGTGGTCGGAGGACGCCATGGGGGAAGCCCTGGAGGCGGTCAGGCTGGGACATATGTCCATAAATCAAGCTGCCATACATTACAATCTGCCTTACTCATCGTTGTACGGCAGATTCAAGAGGGGAATTAAGTATGAGGCTGATATCGAGCCGAATTCCGACAGTCAGACCCAGATAGATAGTCACAGTTACGGGATGGAATATGTGAATACTCATCAACAAATTCAATACCAGAATCAAACAAACAGCTGA
- Protein Sequence
- MRAYECCAVFPQLQTIPGLIRRVAWRAALGFGLRGTHWGKVMRCLDQSIPGSRTAPLMCSLLRTADQLKIKGLCEPSDEREDSPTHLSPQLFARSLSKVRKSSSPKHLKPQDNNRRYNCRKPHPDNISDILDNGSVDSNSDEENDMPEALNDHKRKRADPEQIKPLNMSSHGIMTGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMRDHSPTRTLLTNTIHRTDISDSNIKYCDIKKEGDIKFETLRSYDQDSLLEMDSHMSGPDHSMDSHDDDKSMHTMMVTPELMGMMPGVSNRLDLSSNEVPVLIKNNDGHSENVHHTPRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYEADIEPNSDSQTQIDSHSYGMEYVNTHQQIQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852594;
- 90% Identity
- -
- 80% Identity
- -