Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: bab1
Assembly: GCA_029298725.1
Location: CM055510.1:7824442-7833738[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.1e-11 1.3e-08 34.7 0.0 1 39 373 412 373 416 0.90

2 4 2.8e-13 3.4e-10 39.8 0.2 1 39 427 465 427 468 0.95

3 4 4.9e-19 5.9e-16 58.2 0.0 1 45 482 527 482 527 0.98

4 4 1.4e-16 1.6e-13 50.4 0.0 1 39 534 573 534 577 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.1e-11	1.3e-08	34.7	0.0	1	39	373	412	373	416	0.90
2	4	2.8e-13	3.4e-10	39.8	0.2	1	39	427	465	427	468	0.95
3	4	4.9e-19	5.9e-16	58.2	0.0	1	45	482	527	482	527	0.98
4	4	1.4e-16	1.6e-13	50.4	0.0	1	39	534	573	534	577	0.93

Sequence Information

Coding Sequence: ATGTCTGGCCAACACTATTGTCTGCGATGGAACAATTACCAGAGTAACATGACTTCCGTTTTCCATCAGCTGTTGCAGAATGAGGCCTTCGTCGATGTCACTTTGGCGTGTAATGACTTATCGCTCAAAGCTCACAAGGTGGTGTTATCAGCGTGCTCGTCATATTTCCAGAAGCTCCTTTTAGAAAACCCCTGCAAACACCCCACCATAATAATGCCCCAAGATGTTTGCTACGCCGATCTTAAATTCATCATCGAATTCGTCTACAAAGGAGAAATCGATGTTTCCCAGACGGAATTGCAGTCACTTCTTCGCACAGCCGACCAACTAAAAATCAAAGGCCTCTGCGAACCCTGCGATGAGAAGGAAAACTCTCCAATAGAAACCCACCATTTTAGTTATTCCAGAGTCTGCACACCCTCGACACCCAAACCAAAGCAGTTAAGACCCAACGACAATAATAGAAGACACAAACACAAGAAACCACATTTGATAAACACATCAGACCCTGAAGACAATGAAAGCGTGAACGGACATTCTTCAGACGAAGAAGATGATATGCCAGTGGCTTTAAATGACAACAAAAGAAAAAGGGCCGAGCCTGAACAAGTAAAACCACTCAACATGAGCAGTCATGGGCTTATGACTGGACAGACGATCTTCTCTCAGTTCGGAGTAGACACAGATGATTTTCCACCGGAGCCTCCGGCACCTTCAGCGATTCCTGTGGGCCACGTGGAGATGCAAGATCATTCCCCCACGAGGACGTTACTCACCAATACCATTCACAGAACGGATTTGTCCGATTCTAATGTTAAATACTGCGATATTAAAAAAGAAGCCGATATTAAGTTCGAAACGCTGCGGTCATATGATCAAGATTCTTTGCTGGAGATGGACTCACACATGTCAGGGCCCGACCACTCAATGGACAGTCATGAGGATGATCAGAGTATGCACCAGATGATGGTTACTCCCGAACTGATGAGCATGATGCCTAGCGTTTCGAACAGATTAGATATAAGTAGCAACGAAGTACCTGCACTAAAAAACAACGGGCATTCGGAGAGCATACACCACCCGTCCAGATCGCACGGTGGTGGTCCGAAAACCTGGACTCAGGAAGACATGGATATGGCCTTAGACGCTTTAAGAAACCACAACATGAGCCTAACTAAAgCTTCTGCAACTTATGGTATTCCCTCCACAACGCTCTGGCAGCGTGCACATAGACTAGGTATAGATACTCCAAAGAAAGAAGGTCCTACGAAGTCTTGGACTGAAGAAAGCCTCAATAGCGCACTTGAAGCCCTCAGAACTGGATCGATCTCAGCGAACAAAGCTAGCAAAGCCTACGGTATTCCCAGTAGTACATTGTACAAAATTGCCCGTCGGGAAGGAATACGATTGGCGGCGCCTTTCAACGCCGCTCCCACGACGTGGACTCCAGAAGACCTCGAAAAAGCCTTAGAATCGATCCGATCGGGTCAGACGTCCGTTCAAAAAGCCTCCACGGAGTTCGGAATTCCTACGGGAACTCTTTATGGGAGATGTAAGAGGGAAGGGATTGAGTTGTCGAGGTCGAATCCCACACCTTGGTCGGAGGATGCAATGGGAGAGGCTCTGGAAGCTGTGAGGTTAGGGCATATGTCGATAAACCAGGCTGCCATACACTACAACCTGCCTTACTCTTCCTTGTACGGTCGATTTAAGAGAGGAATAAAGTACGAATCGGACAATATTGAGCCTAATTCGGACAGTCAGAGTCAAATGGAGGGTCATTTCGCGATGGAGTATGCTAACCATCAACAAGTCCAATATCAAAATCAAACGAATAGCTGA
Protein Sequence: MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQTELQSLLRTADQLKIKGLCEPCDEKENSPIETHHFSYSRVCTPSTPKPKQLRPNDNNRRHKHKKPHLINTSDPEDNESVNGHSSDEEDDMPVALNDNKRKRAEPEQVKPLNMSSHGLMTGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVEMQDHSPTRTLLTNTIHRTDLSDSNVKYCDIKKEADIKFETLRSYDQDSLLEMDSHMSGPDHSMDSHEDDQSMHQMMVTPELMSMMPSVSNRLDISSNEVPALKNNGHSESIHHPSRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEESLNSALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESDNIEPNSDSQSQMEGHFAMEYANHQQVQYQNQTNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00852594;
90% Identity: iTF_00414981;
80% Identity: iTF_00753098;