Cang004137.1
Basic Information
- Insect
- Cynaeus angustus
- Gene Symbol
- bab1
- Assembly
- GCA_030157275.1
- Location
- CM058059.1:16819593-16829797[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.6e-12 1.3e-08 34.7 0.0 1 39 373 412 373 416 0.90 2 4 2.6e-13 4.6e-10 39.4 0.1 1 39 427 465 427 468 0.95 3 4 3.4e-19 5.8e-16 58.2 0.0 1 45 482 527 482 527 0.98 4 4 9.3e-17 1.6e-13 50.4 0.0 1 39 534 573 534 577 0.93
Sequence Information
- Coding Sequence
- ATGTCTGGCCAACACTATTGTCTGCGATGGAACAATTACCAGAGTAACATGACTTCCGTTTTCCATCAGTTGTTGCAGAATGAGGCCTTCGTCGATGTCACTTTGGCGTGTAATGACTTATCACTCAAAGCTCACAAGGTGGTGTTATCAGCATGTTCATCATATTTCCAGAAACTACTCTTAGAAAACCCCTGTAAACACCCTACGATAATAATGCCCCAGGACGTGTGCTACGCCGATCTAAAATTCATCATAGAATTCGTCTACAAAGGAGAAATCGACGTTTCCCAGACGGAATTGCAGtcACTTCTTCGCACAGCCGACCAACTAAAAATCAAAGGCCTCTGCGAACCCTCCGACGAGAAAGAAAACTCTCCAATAGAAGCCCGCCATTTCAGTTATTCCAAAGTCTGCACACCCCCAACACCTAAACCAAAGTTAAAACCCCACGACAATAACAGAAGGCATAAACACAAGAAACCACATTTGACAAATACATCAGACCCTGAAGACAATGAAAGCGTGAACGGACATTCTTCAGACGACGAAGATGATATGCCAGTGGCTTTAAATgacaacaaaagaaaaaggGCCGAGCCTGAACAAGTAAAACCACTCAACATGAGCAGTCATGGGCTTATGACTGGACAGCAAACGATCTTCTCTCAGTTCGGAGTAGACACAGATGATTTTCCACCGGAGCCTCCGGCACCTTCGGCGATTCCTGTGGGTCACGTGGAGATGCAAGATCATTCTCCCACGAGGACATTACTCACCAATACCATTCACAGAACGGATTTGTCCGATTCTAATGTTAAATACTGCGATATCAAGAAAGAAGCCGATATTAAGTTCGAAACGCTGCGGTCATATGATCAAGATTCTTTGCTGGAGATGGACTCACACATGTCGGGGCCCGACCATTCGATGGACAGTCATGAGGATGATCAAAGCATGCACCAGATGATGGTCACTCCCGAGTTAATGAGTATGATGCCCAGCGTTTCGAACAGATTAGatataagTAGCAACGAAGTACCTGCACTAAAAAACAACGGGCATTCGGAGAGCATACACCACCCGTCCAGATCGCACGGTGGTGGTCCGAAAACCTGGACTCAGGAAGACATGGATATGGCCTTAGACGCTTTAAGAAACCACAACATGAGCCTAACTAAAGCTTCTGCAACTTATGGTATTCCCTCCACAACGCTCTGGCAGCGTGCACATAGACTAGGTATAGATACTCCAAAGAAAGAAGGTCCTACGAAGTCCTGGACGGAAGAGAACCTCAATAGCGCACTGGAAGCCCTCAGAACTGGAACGATCTCAGCGAACAAAGCCAGCAAAGCTTACGGTATTCCCAGTAGTACATTGTACAAAATTGCCCGTCGAGAAGGAATACGGTTGGCGGCACCTTTCAACGCCGCTCCCACGACGTGGACTCCAGAAGACCTCGAAAAAGCCTTAGAATCGATCCGGTCGGGTCAGACGTCCGTTCAAAAAGCCTCCACAGAGTTTGGAATTCCCACGGGAACTCTTTATGGGAGATGTAAGAGAGAAGGGATTGAATTGTCGAGGTCGAATCCCACGCCTTGGTCGGAAGATGCCATGGGGGAGGCTTTGGAAGCTGTGagGTTAGGGCACATGTCGATAAACCAGGCTGCCATACACTACAACCTGCCTTATTCTTCCTTGTACGGTCGATTTAAGAGAGGGATAAAGTACGAATCGGACAATATTGAGCCTAATTCGGACAGTCAGAGTCAGATGGAGGGGCATTTCACAATGGAATATGCTAACCATCAACAAGTCCAATATCAAAATCAAACGAATAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQTELQSLLRTADQLKIKGLCEPSDEKENSPIEARHFSYSKVCTPPTPKPKLKPHDNNRRHKHKKPHLTNTSDPEDNESVNGHSSDDEDDMPVALNDNKRKRAEPEQVKPLNMSSHGLMTGQQTIFSQFGVDTDDFPPEPPAPSAIPVGHVEMQDHSPTRTLLTNTIHRTDLSDSNVKYCDIKKEADIKFETLRSYDQDSLLEMDSHMSGPDHSMDSHEDDQSMHQMMVTPELMSMMPSVSNRLDISSNEVPALKNNGHSESIHHPSRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESDNIEPNSDSQSQMEGHFTMEYANHQQVQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852594;
- 90% Identity
- iTF_00415235; iTF_01480042; iTF_00752868; iTF_00753098; iTF_01480781; iTF_01409874; iTF_01480256; iTF_00870479; iTF_00870702;
- 80% Identity
- iTF_00415235;