Ipal000007.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- bab1
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000001.1:116640-122588[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7e-12 9e-09 34.6 0.0 1 39 414 453 414 457 0.90 2 4 1.9e-13 2.4e-10 39.6 0.1 1 39 468 506 468 509 0.95 3 4 3.1e-19 4e-16 58.1 0.0 1 45 523 568 523 568 0.98 4 4 8.9e-17 1.1e-13 50.3 0.0 1 39 575 614 575 618 0.94
Sequence Information
- Coding Sequence
- atgTCTGGCCAACATTACTGCCTACGATGGAACAATTACCAAAGTAATATGACTTCAGTTTTTCATCAACTATTGCAAAATGAAGCTTTTGTTGATGTGACTTTGGCCTGTAATGACTTATCGCTAAAAGCACATAAAGTAGTACTGTCAGCGTGTTCATCCTATTTTCAAAAGTTATTACTAGAAAATCCATGCAAACATCCAACGATAATAATGCCCCAAGATGTCTGCTATGCTGATTTAAAGTTCATCATAGACTTCGTTTACAAAGGAGAAATCGACGTTTCTCAGACTGAGTTACAGtcgcTCCTCCGAACGGCTGATCAACTAAAGATCAAAGGTTTATGTGAACCAACTGacgaaaaagaaaactcaCCAACACCGATTCCTCCGCAATTTTTCGCTAAAACGTTTTCGAGAAAATCACCGAAACATTTACGAACACAAgacaataataagaaacgtaaacataataaaaaaccTAATCctgataatacaacaacaacaacaacaacaacaacaacaacaactcctgctactactactgcaACCACTTCAGATCGGGAAGATAATGGTAGTGTTGAAAATGGTAGTCATAATgagaatgatgataatgatgatgatgatgatgacggcGAAAATGATAACTGTCCAACAACTTTAGGAAcaaatgaacaacaacaacaaaaacgtaGTAGAAAAAGCAgtgaaacaacaacgaaaGATCAAGTAAAGCCACTCAATATGACCAGTCATGGAATTATGACAGGCCAgACAATCTTCTCTCAGTTTGGTGTAGATTCAGATGATTTTCCACCGGAACCACCGGCACCATCAGCAATACCAGTTGGACATGTTGATATGCAAGAACATTCACCAACACGTACGTTACTTACAAATACAATACATAGAACTGATTTATCagattctaataataaattttgcgATATTAAAAAAGAAGTAGATGTTAAATTTGAAACATTACGATCATCTTATGACCAAGATTCATTATTAGAAATGGACTCACATATGTCAGGGCCTGATCATTCTATGGATAgtcatgatgatgatcaaaGTATGCACCAAATGATGGTTACACCAGAACTGATGGGCATGATGCCCGGTGTTTCTAATAGACTAGATTTAAGTAGTAACGAAGTACctgtattaaaaaataatggtCATTCAGACAATTCACATCATACGCCTAGATCTCATGGTGGTGGCCCTAAAACATGGACTCAGGAAGATATGGATATGGCCTTAGACGCTTTACGGAATCACAACATGAGTCTAactaaaGCGTCCGCAACTTACGGAATTCCCTCCACTACATTATGGCAACGTGCTCATAGATTAGGTATAGATACACCAAAGAAAGAAGGCCCTACCAAATCATGGActgaagaaaatttgaataatgcTTTAGAAGCCCTTCGTACTGGAACAATATCAGCAAATAAAGCTAGTAAAGCTTATGGAATCCCTAGTAGTACCTTATATAAGATAGCAAGACGAGAAGGTATCCGACTGGCGGCTCCCTTTAATGCCGCTCCCACAACTTGGACACCAGAAGACTTAGAAAAAGCCTTAGAATCAATTCGATCCGGTCAAACATCTGTACAGAAAGCATCAACAGAATTCGGTATCCCAACAGGTACATTGTATGGTCGTTGTAAACGGGAAGGTATTGAATTATCACGATCGAATCCAACACCATGGTCAGAAGATGCAATGGGTGAGGCTTTAGAAGCAGTCAGATTAGGACATATGTCAATAAACCAAGCGGCCATACATTATAATCTGCCATATTCATCATTATATGGTCGATTTAAACGTGGTATTAAATATGATTCGGATAATATCGAACCAAATTCAGATAGTCAATCACAAATGGATGGTCATACGTTTGGTATTGAATATGGTAATAATACccatcaacaaattcaatatcAAAATCAAACGAATAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIDFVYKGEIDVSQTELQSLLRTADQLKIKGLCEPTDEKENSPTPIPPQFFAKTFSRKSPKHLRTQDNNKKRKHNKKPNPDNTTTTTTTTTTTTPATTTATTSDREDNGSVENGSHNENDDNDDDDDDGENDNCPTTLGTNEQQQQKRSRKSSETTTKDQVKPLNMTSHGIMTGQTIFSQFGVDSDDFPPEPPAPSAIPVGHVDMQEHSPTRTLLTNTIHRTDLSDSNNKFCDIKKEVDVKFETLRSSYDQDSLLEMDSHMSGPDHSMDSHDDDQSMHQMMVTPELMGMMPGVSNRLDLSSNEVPVLKNNGHSDNSHHTPRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEPNSDSQSQMDGHTFGIEYGNNTHQQIQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00841962; iTF_00813832; iTF_00814317; iTF_00814515; iTF_00813632; iTF_01480042; iTF_01480781; iTF_01409874; iTF_01480256; iTF_00929490; iTF_00929699; iTF_00987253; iTF_00987048; iTF_01366443; iTF_01366248; iTF_01566359; iTF_01566160;
- 90% Identity
- iTF_01366443;
- 80% Identity
- iTF_00841962;