Ltri002668.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- bab1
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000277.1:14162-19780[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7e-12 9e-09 34.6 0.0 1 39 415 454 415 458 0.90 2 4 1.9e-13 2.4e-10 39.6 0.1 1 39 469 507 469 510 0.95 3 4 3.1e-19 4e-16 58.1 0.0 1 45 524 569 524 569 0.98 4 4 8.5e-17 1.1e-13 50.3 0.0 1 39 576 615 576 619 0.93
Sequence Information
- Coding Sequence
- atGTCTGGCCAGCATTATTGCCTACGATGGAACAATTACCAAAGTAATATGACATCAGTGTTTCATCAACTATTACAGAATGAGGCTTTCGTTGATGTAACATTGGCGTGTAATGACTTATCGTTAAAAGCACACAAAGTAGTATTATCAGCGTGTTCAacatatttccaaaaattattgttagaaaatccATGTAAACATCCAACGATAATAATGCCCCAAGATGTCTGCTATGCTGATTTAAAGTTCATCATAGACTTCGTGTACAAAGGAGAAATCGACGTTTCTCAGACTGAATTGCAGtcGCTTCTTCGTACAGCCGATCAACTAAAAATCAAAGGTTTATGTGAGCCGACTGATGAAAAAGAGAATTCACCAACACCAATTCCTCCACAATTTTTTGCTAAAACGTTTTCGAGAAAATCACCGAAACATTTAAGAACACAAGACAATAATAAGAAAcgtaaacataataaaaaaccaCACATTGACAATACCGCAAcgaccacaacaacaacaacaacaacaacaacaaacaatacaaactcAGATCGGGAAGATAATGTTAGTATAGAAAACGGtagtcataataataatgatgatgatgatggtgatgatgatgataatgatgatgatgatggaggTGAGAATGGCAACAGTATAACAACCTTAGGAAccaatgaaaaacaacaaaaacgttgTAGAAAAAACagtgatacaacaacaaaagatcgAACAAAACCATTAAACATGAGTAGTAATGGAATTATGACAGGACAgacAATCTTCTCTCAATTTGGAGTTGACACAGATGATTTCCCACCAGAACCACCGGCACCTTCAGCAATACCAGTCGGACATGTTGATATGCAAGAACATTCACCAACACgtacattattaacaaatacaatacatAGGACTGATCTATCCGattccaataataaattctGCGATGTTAAAAAAGAAGTAGATGTGAAATTTGAAACATTACGATCATCTTATGATCAAGATTCATTATTAGAAATGGATTCACATATGTCAGGACCTGATCATTCGATGGATAGTCATGATGATGAACATAGTATGCATCAAATGATGGTCACACCAGAACTGATGGGCATCATGCCCGGTGTCTCCAATAGATTAGatttaagtAACGAAGTACctgcatcaaaaaataatggCCATTCAGAAAATTCACACCATACCTCACGATCTCATGGTGGTGGCCCTAAAACATGGACTCAGGAAGACATGGATATGGCCTTAGACGCTTTACGAAATCACAATATGAGTCTAACTAaaGCGTCAGCGACTTACGGTATTCCCTCCACTACACTCTGGCAACGTGCTCATAGACTAGGTATAGATACACCAAAGAAAGAAGGTCCTACGAAATCATGGACTgaagaaaatctaaataatgCATTAGAAGCCCTCCGAACTGGAACCATATCAGCTAACAAAGCTAGTAAAGCTTACGGAATTCCGAGTAGTACGCTATATAAGATAGCTAGACGTGAAGGTATACGTTTGGCGGCGCCTTTTAATGCAGCACCTACGACTTGGACACCTGAAGATTTAGAAAAAGCCTTAGAATCTATCAGATCAGGACAAACTTCAGTACAAAAGGCATCAACCGAATTTGGTATCCCTACTGGTACATTATATGGTCGATGTAAACGGGAAGGTATTGAATTATCACGATCGAATCCCACCCCATGGTCAGAAGATGCAATGGGTGAAGCTCTAGAAGCTGTCAGattggGACATATGTCGATCAATCAAGCGGCCATACACTACAATCTGCCTTATTCCTCATTGTATGGTAGATTTAAAAGAGGCATTAAATACGAATCGGATAATATAGAACCAAACTCTGATAGTCAATCGCAGCTAGATGGACATACGTTTGGTATTGAATATGCGAATACACATCAAGttcaatatcaaaatcaaacaaatagcTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSTYFQKLLLENPCKHPTIIMPQDVCYADLKFIIDFVYKGEIDVSQTELQSLLRTADQLKIKGLCEPTDEKENSPTPIPPQFFAKTFSRKSPKHLRTQDNNKKRKHNKKPHIDNTATTTTTTTTTTTNNTNSDREDNVSIENGSHNNNDDDDGDDDDNDDDDGGENGNSITTLGTNEKQQKRCRKNSDTTTKDRTKPLNMSSNGIMTGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMQEHSPTRTLLTNTIHRTDLSDSNNKFCDVKKEVDVKFETLRSSYDQDSLLEMDSHMSGPDHSMDSHDDEHSMHQMMVTPELMGIMPGVSNRLDLSNEVPASKNNGHSENSHHTSRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESDNIEPNSDSQSQLDGHTFGIEYANTHQVQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00841760;
- 90% Identity
- iTF_01366443;
- 80% Identity
- iTF_00929699;