Basic Information

Insect: Tribolium madens
Gene Symbol: -
Assembly: GCA_015345945.1
Location: JADDYM010000097.1:8308862-8311084[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.1e-11 9.1e-09 34.9 0.0 1 39 319 358 319 362 0.90

2 4 4e-13 3.2e-10 39.5 0.1 1 39 373 411 373 414 0.95

3 4 5.1e-19 4e-16 58.4 0.0 1 45 428 473 428 473 0.98

4 4 1.4e-16 1.1e-13 50.6 0.0 1 39 480 519 480 523 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.1e-11	9.1e-09	34.9	0.0	1	39	319	358	319	362	0.90
2	4	4e-13	3.2e-10	39.5	0.1	1	39	373	411	373	414	0.95
3	4	5.1e-19	4e-16	58.4	0.0	1	45	428	473	428	473	0.98
4	4	1.4e-16	1.1e-13	50.6	0.0	1	39	480	519	480	523	0.93

Sequence Information

Coding Sequence: ATGCAGACGATCCCCGGACTAATCCGGAGGGTTGCCTGGCGAGCGGCACTCGGCTTTAGGCTCCGGGGCACGCATTGGGGGAAAGTGATGCGGTGTCTGGACCAATCAATACCGGGTTCAAGGACGGCTTCTCTTATATGTTCTCTTCTTCGAACGGCAGACCAGCTGAAAATCAAAGGCCTCTGTGAACCCCCCGACGAAAAAGAGAATTCACCAATAGAGCCTCAATATTTCCCCAAAAATTTTTCCAAAGTTAGGAAGTCGTCATCACCTAAACAATTTAAGCCACAAGACAATAACAAAAGATACAAACACAAGAAACCACACTTAGACAATACATCGGATAAGGAAGATAATGGTAGTATAGAAGCACATTCTTCAGACGAGGAACATGATATGCCAGTAGCTTTAAATGATCACAAAAGAAAAAGGGCGGAGCCTGAACAAGTAAAACCACTCAACATGAGCAGTCATGGGATTTTGACGGGGCAGACGATCTTCTCTCAGTTTGGAGTAGACACAGATGACTTCCCTCCAGAACCACCTGCGCCTTCGGCGATCCCAGTGGGTCATGTGGATATGCAAGACCATTCCCCAACTCGTACCCTCCTCACCAACACCATACACAGAACGGATTTATCCGACTCCAATGTCAAATACTGCGATATCAAAAAAGAGGCAGATATCAAATTTGAAACGTTGCGATCCTACGACCAAGACTCTTTACTCGAGATGGATTCACACATGTCCGGCCCTGATCATTCCATGGATAGTCACGAGGATGACCAAAGTATGCACCAGATGATGGTCACTCCAGAACTGATGGGTATGATGCCGGGAGTTTCAAATAGATTAGAATTAAGTAGCAACGAAGTACCTGCATTAAAAAATAACGGGCATTCAGACAGTGTGCATCACACGCCGAGATCGCACGGCGGAGGCCCGAAAACTTGGACTCAGGAAGATATGGATATGGCCTTAGATGCTTTAAGAAATCACAATATGAGCCTAACAAAAGCTTCAGCAACTTACGGTATTCCCTCCACTACGCTATGGCAGCGTGCTCATAGATTAGGTATAGATACGCCAAAGAAAGAAGGACCGACAAAGTCATGGACTGAAGAAAACTTAAACAGTGCGCTTGAGGCGCTGAGAACTGGAACAATTTCTGCCAACAAAGCGAGTAAAGCTTACGGTATTCCCAGTAGCACTTTGTACAAAATAGCCCGCCGCGAAGGCATCCGGTTAGCCGCCCCATTTAACGCCGCCCCCACGACGTGGACCCCTGAAGATCTCGAAAAGGCCTTAGAATCCATTAGATCAGGTCAAACGTCCGTGCAAAAAGCCTCGACCGAGTTCGGCATTCCTACGGGAACTCTTTATGGAAGATGTAAGCGGGAAGGGATTGAACTTTCCAGATCGAATCCTACGCCGTGGTCCGAGGATGCCATGGGAGAGGCACTGGAAGCTGTTAGGTTAGGACATATGTCCATAAATCAGGCTGCCATACACTACAATCTGCCTTATTCGTCGCTGTATGGCAGATTTAAAAGGGGTATCAAGTACGAATCGGATAATATTGAGCCAAATTCCGATAGTCAGTCCCAAATGGACGGTCACAGTTACGGAATGGATTACGCGAATACTCATCAACAAATTCAATACCAGAATCAGACAAATAGCTGA
Protein Sequence: MQTIPGLIRRVAWRAALGFRLRGTHWGKVMRCLDQSIPGSRTASLICSLLRTADQLKIKGLCEPPDEKENSPIEPQYFPKNFSKVRKSSSPKQFKPQDNNKRYKHKKPHLDNTSDKEDNGSIEAHSSDEEHDMPVALNDHKRKRAEPEQVKPLNMSSHGILTGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMQDHSPTRTLLTNTIHRTDLSDSNVKYCDIKKEADIKFETLRSYDQDSLLEMDSHMSGPDHSMDSHEDDQSMHQMMVTPELMGMMPGVSNRLELSSNEVPALKNNGHSDSVHHTPRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESDNIEPNSDSQSQMDGHSYGMDYANTHQQIQYQNQTNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00841760;
90% Identity: iTF_00414981;
80% Identity: -