Scau010069.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- bab1
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010002041.1:1412-6498[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.3e-12 9.1e-09 34.6 0.0 1 39 408 447 408 451 0.90 2 4 2.2e-13 3.2e-10 39.3 0.1 1 39 462 500 462 503 0.95 3 4 2.8e-19 4e-16 58.1 0.0 1 45 517 562 517 562 0.98 4 4 8e-17 1.1e-13 50.3 0.0 1 39 569 608 569 612 0.94
Sequence Information
- Coding Sequence
- ATGTCTGGCCAACATTACTGCCTGCGATGGAACAATTACCAAAGTAATATGACTTCAGTTTTCCATCAACTATTACAAAATGAAGCTTTCGTTGATGTTACATTGGCCTGTAATGACTTATCATTAAAAGCACACAAAGTAGTACTATCAGCGTGTTCATCTTATTTCCAAAAgttattgttagaaaatcCATGTAAACATCCAACGATAATAATGCCCCAAGATGTCTGCTATGCTGATTTAAAGTTCATCATAGACTTCGTTTACAAAGGAGAAATCGACGTTTCTCAAACTGAGTTGCAGtCACTTCTACGGACTGCTGACCAATTAAAGATCAAAGGTTTGTGCGAGCCAACTGacgaaaaagaaaattcaccaACACCAATTCCGCCGCAATTTTTCGCCAAAACATTTTCGCGGAAATCACCGAAACATTTACGTACACTAGACAATAATAAGAAACGTAAACATAATAAAAGAACGCCAATTGACAATAGCGCAACGACCACAACTAcgaatacaacaacaaattctgaTCGTGAAGATAATGGTAGTGTCGAAAATGGTAGTCATAATGATGATGTCGATGACggtgacgatgatgatgatgatgataatggcGATAATGACAATAGTAGAACGACTTTAGGAACAAATGACCAACAACATAAACGTAGTAGAAAAAGCAGTGAAACAACGACGAAAGATCAAGTAAAGCCACTAAACATGAGTAGTCATGGAATTATGACAGGTCAgACAATCTTCTCGCAATTCGGAGTGGATACAGATGATTTCCCACCGGAGCCTCCGGCACCTTCAGCCATACCAGTCGGGCATGTCGATATGCAAGAACATTCACCAACACGcacattattaacaaatacaaTCCATAGGACCGATTTATCGGaatctaacaataaattttgcgatatcaaaAAAGAAATAGATGTCAAATTCGAAACTTTACGTTCATCATACGATCAGGACTCTTTATTGGAGATGGATTCGCACATGTCCGGTCCTGATCATTCGATGGATAGTCATGATGATGAGCAAAGTATGCATCAAATGATGGTCACACCAGAACTGATGGGCATTATGCCCGGTGTTTCTAATCGTTTAGACTTAAGTAATAACGAAGTACCTgctattaaaaataatggacATTCTGATAATTCCCATCATACGTCACGATCGCATGGCGGCGGTCCCAAAACATGGACTCAGGAAGATATGGATATGGCCTTAGACGCTTTACGCAACCACAATATGAGTCTGACTaaaGCGTCAGCGACTTACGGTATTCCCTCCACTACTCTCTGGCAACGTGCTCATAGACTAGGCATAGATACTCCAAAAAAAGAAGGACCTACTAAATCATGGACTGAAGAGAACCTGAATAGTGCTCTAGAAGCCCTCCGAACCGGCACCATATCGGCTAATAAAGCTAGCAAAGCTTACGGCATTCCGAGTAGTACTTTGTATAAAATAGCGAGACGTGAAGGTATCCGATTGGCGGCACCTTTCAATGCGGCTCCGACAACTTGGACACCGGAAGATTTAGAAAAAGCTTTAGAATCGATACGATCCGGCCAAACTTCAGTACAAAAAGCCTCAACCGAATTCGGTATACCGACTGGTACTTTATATGGTCGATGTAAACGTGAAGGTATCGAATTGTCGCGGTCCAATCCGACGCCATGGTCGGAAGATGCAATGGGTGAGGCTCTAGAAGCTGTcagaTTAGGACACATGTCGATTAATCAAGCGGCCATACATTATAATCTGCCTTATTCATCATTGTATGGTAGATTCAAAAGGGGCATTAAATACGATTCGGACAATATCGAGCCGAATTCTGATAGTCAATCGCAATTAGATGGACATACTTTTGGTATTGATTATGGTAATTCGCATCAACAAATCCAATATCAAAATCAGACAAATAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIDFVYKGEIDVSQTELQSLLRTADQLKIKGLCEPTDEKENSPTPIPPQFFAKTFSRKSPKHLRTLDNNKKRKHNKRTPIDNSATTTTTNTTTNSDREDNGSVENGSHNDDVDDGDDDDDDDNGDNDNSRTTLGTNDQQHKRSRKSSETTTKDQVKPLNMSSHGIMTGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMQEHSPTRTLLTNTIHRTDLSESNNKFCDIKKEIDVKFETLRSSYDQDSLLEMDSHMSGPDHSMDSHDDEQSMHQMMVTPELMGIMPGVSNRLDLSNNEVPAIKNNGHSDNSHHTSRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEPNSDSQSQLDGHTFGIDYGNSHQQIQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00841760;
- 90% Identity
- iTF_01366443;
- 80% Identity
- iTF_01366443;