Hcic008472.1
Basic Information
- Insect
- Hycleus cichorii
- Gene Symbol
- bab1
- Assembly
- GCA_013841215.1
- Location
- JACDRQ010000002.1:720348-730102[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.7e-12 8.2e-09 34.6 0.0 1 39 421 460 421 464 0.90 2 4 2.1e-13 2.2e-10 39.6 0.1 1 39 475 513 475 516 0.95 3 4 3.4e-19 3.6e-16 58.1 0.0 1 45 530 575 530 575 0.98 4 4 9.4e-17 1e-13 50.3 0.0 1 39 582 621 582 625 0.93
Sequence Information
- Coding Sequence
- ATGTCTGGCCAACATTACTGCCTGCGATGGAACAATTACCAAAGTAATATGACTTCAGTGTTTCATCAACTATTACAGAATGAAGCATTCGTTGATGTAACATTGGCATGTAATGATTTATCATTAAAAGCACACAAAGTAGTACTGTCAGCGTGTTCAACTTATTTCCAAAAATTATTGTTAGAAAATCCATGTAAACATCCAACGATCATAATGCCCCAAGATGTCTGCTATGCTGATCTAAAGTTCATCATAGACTTTGTTTACAAAGGAGAAATCGACGTTTCTCAAACTGAATTGCAGTCTCTTCTCCGAACGGCCGACCAACTGAAAATCAAAGGCCTTTGTGAGCCGACTGACGAAAAAGAGAATTCACCAACGCCAATTCCACCGCAATTTTTCGCTAAAACTTTCTCGAGAAAATCGCCGAAACACCTACGAACACAGGACAATAATAAAAAACGTAAACATAATAAGAAACCTCATATTGAGGATATCACAACGACTGCATCATCAACAACACCAGTAGCCGCGAACACAATAAACAATACAACTTCAGATCGTGAAGATAATGGTAGCATTGAAAATAGTAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAACATTAAGCACAAATGAACAACAACAAAAACGTTGTAGAAAAACCAGTGAGACAACACAAACAACACCAACAACAAAAGATCAAGTAAAACCACTAAACATGAGTAGTAATGGAATTATAACAGGCCAGACAATCTTCTCTCAGTTTGGAGTCGACACAGACGATTTCCCACCGGAACCGCCAGCACCATCAGCAATCCCAGTTGGGCACGTTGATATGCAAGAACATTCACCAACGCGTACATTATTAACAAATACAATCCATAGGACTGATTTATCCGAATCTAACAATAAATTTTCGGATATTAAAAAAGAAGTAGATGTAAAATTCGAAACGTTACGTTCATCGTACGACCAAGATTCATTATTAGAAATGGATTCGCACATGTCAGGACCCGATCATTCGATGGATAGTCATGATGATGAACAAAGTATGCATCAAATGATGGTCACACCGGAACTGATGGGCATTATGCCCGGCGTTTCTAGTAGATTAGATTTAAGTAACGAAGTACCTGCATCAAAAAATAACGGCCATTCTGATAATTCACACCATGGGTCACGATCGCACGGCGGTGGACCTAAAACTTGGACTCAGGAAGACATGGACATGGCCTTAGACGCTTTACGAAACCACAATATGAGTCTAACTAAAGCGTCAGCGACTTACGGTATTCCCTCCACTACACTCTGGCAACGTGCCCATAGATTAGGTATAGACACACCAAAGAAAGAAGGCCCGACAAAGTCTTGGACTGAAGAGAATTTAAACAATGCTCTAGAAGCATTGCGGACTGGAACTATTTCAGCTAATAAAGCCAGTAAAGCTTACGGAATTCCAAGTAGTACGTTGTATAAAATAGCCAGAAGGGAGGGTATACGATTAGCGGCGCCTTTTAACGCTGCCCCTACCACATGGACTCCTGAAGACTTAGAAAAAGCTTTAGAATCGATCAGATCTGGGCAAACGTCAGTACAAAAAGCTTCAACTGAATTCGGTATCCCTACCGGTACGCTATACGGTCGATGTAAACGTGAAGGTATTGAATTATCGCGTTCAAATCCGACACCGTGGTCGGAAGATGCAATGGGTGAAGCATTAGAGGCTGTTAGATTAGGTCATATGTCGATTAATCAAGCGGCCATCCATTATAATCTGCCTTATTCATCGTTATATGGTAGATTTAAAAGGGGCATTAAATATGAATCGGACAATATCGAACCAAATTCGGATAGTCAATCGCAATTAGATGGACATTCGTTTGGTATTGAATATGCGAGTACACATCAACTTCAATATCAAAATCAAACAAATAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSTYFQKLLLENPCKHPTIIMPQDVCYADLKFIIDFVYKGEIDVSQTELQSLLRTADQLKIKGLCEPTDEKENSPTPIPPQFFAKTFSRKSPKHLRTQDNNKKRKHNKKPHIEDITTTASSTTPVAANTINNTTSDREDNGSIENSSXXXXXXXXXXXXXXXXXXXXXXXXTTLSTNEQQQKRCRKTSETTQTTPTTKDQVKPLNMSSNGIITGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMQEHSPTRTLLTNTIHRTDLSESNNKFSDIKKEVDVKFETLRSSYDQDSLLEMDSHMSGPDHSMDSHDDEQSMHQMMVTPELMGIMPGVSSRLDLSNEVPASKNNGHSDNSHHGSRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESDNIEPNSDSQSQLDGHSFGIEYASTHQLQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00841760;
- 90% Identity
- iTF_01366443;
- 80% Identity
- iTF_00813832;