Hamb012916.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- stc
- Assembly
- GCA_949774945.1
- Location
- OX458974.1:12360317-12369815[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2 2.8e+04 -4.4 1.6 15 19 573 577 572 577 0.81 2 13 0.042 5.8e+02 1.2 1.2 2 10 605 613 605 613 0.93 3 13 4e-05 0.55 10.9 18.1 4 19 621 636 619 636 0.93 4 13 1.6e-07 0.0022 18.6 11.6 1 18 672 689 672 690 0.98 5 13 3.8e-05 0.53 11.0 14.4 1 19 731 749 731 749 0.98 6 13 1.9e-05 0.26 11.9 12.7 1 19 790 812 790 812 0.87 7 13 2 2.8e+04 -5.4 2.2 6 10 842 846 842 846 0.94 8 13 0.0035 49 4.7 7.4 1 11 852 862 852 863 0.95 9 13 0.046 6.3e+02 1.1 0.3 4 10 867 873 866 874 0.93 10 13 6.5e-06 0.09 13.4 15.0 3 19 881 897 879 897 0.92 11 13 0.00058 8 7.2 9.2 10 18 944 952 941 953 0.92 12 13 4.8e-08 0.00066 20.2 14.0 1 17 989 1007 989 1013 0.85 13 13 0.0011 15 6.3 10.2 1 19 1019 1036 1019 1042 0.83
Sequence Information
- Coding Sequence
- ATGTCTCAGTGGAACAACACTTACGCCTACAACAACCAGTACCAAGCTTGGAATGGCGACCCAAACGTCCAATATGTCAACCAAGCCTACTACCCTAATAGACCAGAACAAGCTAATCAGTATGTGAGCTTTAATGAGTTTCTTTCTCAAATGCAAACCAGTGGTGCGCCCAACGCTAGCAACTATAGCAATGTGCAATATGAAAACTATCCTTCAAGGCAATATAATTACCAGAATGTACCTTCCACTGCTCAAAACCCCCAGTTAGACAGTTATGGATATGCGGCAACCACAGCGACTGTGTCCAGTGGCACTGAAGCTTACCCTATGAATGTTCAGAGTCAATACAACCCAGTGGCAGCCAATCCTAACGCTTATACAAATGCTATGATACTCAAATCTAATCTCACTCCTACAGCTACCGAATTTGTGCCAAAAGGTTCTATGATGACACCTTCAAGTAGCACTCAAAACATCACTGAACCTGTACATGATGATAGTGAATCTAGAAATAATTATAGCAATGTAACTGAACCTAGGAACCATTACAATAGTATGAATGATTCTCGAAATAACTACCCTAGTGTAAGTGAACCACGAAACGCCAGCGGTAGTTCATCAGACACTAACTGGAGAGAAAGATCGCAGAGCTCACAACAAAACACTGAAACAAGCCagaaaactgaatcataccaacGTCCCCAAGAACACCCTAGAAACCAAGAATCAAATGGTCGCCACCGTGATAACAATTATCGCAATAACGAATCAAACGGGCGACATCATGATTCTAACAACCGCAATCAAGAATCAAACAGCCGTAATCAGGAACTAGATAATAGACAGTATGAATCAAATAGTCGCCAACAAGATTCTAGCAGCCGTAACTATGAATCTAACAACCGTAACTGtgattcaaataataaaagagGCCAAGGAAAAGGAAATTACAAGTCAAAGAATAAAGATGATGCTCGTACCTTCTACAACAGTGCTATAAGTAAGGACAGTCAGGATGTGAGGAATGGCAGAGGAGAAACTTCTGGGCGCGGTAAGAATTGGGTTGGTACTCCGCGACTTCGTGCTATAGATCGTAATAACACAGAAGATGAACAATACGCCAATACTTACTTACAAGGTAGAGAAGATAGAATGGAGAGAGATAACAGAGACAGAGAGAGAGAAAACAGAGATAGAGATAGGGAAAGAGAAATCCGTGAGAAAGATAGAGATAGCAGAGATATTCGTGAAAAAGATAGAGATAACCGAGATATTCGTGAAAGAGACAGAGGTAACCGAGATATCCGTGATAGAGACAGAGATTATAGAGACATCCGTGACAGGGATAGAGACAACAGAGATTCCCGTGACATGGATAGGGATTACCGAGATGTTCGTGAAATGGATAGAAGTAACAGAGATATTCGCGAGAGGGACAGAGATACTAAAGAGAGGGAGAGAGCAATCAAGTCTGAAAATGTACCCAGTCCTGCacgaactaaaactaaatatggCAATGATCAAGTAAACAAGGAGATGACCCAACGTGAGCGTTTAACTGAACAGCTAGACAAGGGCACTCTGGAGTGCTTGGTCTGTTGCGACAGAGTCAAGCAATTTGACCAGGTGTGGTCGTGCTGCAACTGTTACCATGTGCTGCATCTGAGGTGCATCCGGAAATGGGCCATGAGCAGTATGGTTGaGGGTAAGTGGCGTTGCCCAGCCTGCCAGAACACGAACGAAACTATCGCTACTGAATACCGCTGCATGTGCGGAGCGGTGCGCGCGCCGGAGTACCAGCGCGGCTCCACGGGCGCGCACACGTGCGGCCGCGCCTGCCGCCGCCCAAGAGCCTGCCCGCACCCCTGCACGCTGCTGTGCCATCCCGGCCCGTGCCCACCCTGCCAGGCTACTGTTGTCAAACATTGTGGCTGCGGCGTAGAAACCCGCTCCGTACTCTGCAGCAGCAAGTTACCGCAGGTGTGCGGTCGCATCTGCGGACGGACCCTACTGTGCGGTGTGCACAGCTGTACCAAGGAGTGTCACGAGGGGCCCTGTGACATATGTGCTGAGACTGTCGAACAAGTATGCTACTGCCCGGCCGCCAAGTCCCGCTCCGTGGCGTGCACGGCCGACACGGGCTCGTGCGCGCACTGGTCGTGCGGCGACACGTGCGGCCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGCGCCCTGCCACGCGCCGCCCTGCCAGCCCTGCCAGCTGCTGCCGCAGTACGTGCGGAGCTGTCCTTGTGGGAACACGCAGTTGGCCAAAGATTCTCGCAAAGCGTGCACGGACCCGATCCCGTTGTGCGGCAACATCTGTGCCAAACCGCTGCAGTGCGGCCCGGCCGGAGACAAACATTTCTGCAAACTTAATTGTCATGAAGGACCGTGTCCTGAATGTCCCGACAAGACGGTGCTGCAGTGCCGCTGCGGCCACTCGAGCCGCGAGGTGCCCTGCGCCGACCTGCCCCAGATGTACAACAATGTGCTGTGCCAAAAGAAGTGCAACAAGAAGCTGTCGTGCGGGCGGCACCGCTGCCGCACGGTGTGCTGCGCGGCCACGTCGCACCGCTGCGCCGTGGTGTGCGGGCGCACGCTGTCGTGCCAGACGCACCGCTGCGAGGAGTTCTGCCACACCGGACACTGCGCGCCCTGCCCGCGCGTCAGTTTCGAGGAGCTGTCGTGCTCGTGCGGCGCGGAGGTGCTGCTGCCGCCCGTGCGgtgcggcgcgcgcgcgcccgCGTGCTCGGCGCCGTGCGCGCGCGCGCGCGCCTGCCGCCACCCGCCGCACCACTCGTGCCACGCGGGGGACTGCCCGCCCTGCGTCGTGCTCACCACCAAGCGCTGCCACGGCGACCATGAGGAGCGAAAAACTATACCGTGTTCTCAAGAAGAGTTCTCGTGCGGCCTTCCGTGCGGGAAGCCACTACCTTGCGGCAAGCATACCTGTATCAAGACCTGTCACAAGGGACCCTGTGACACTGGCAAATGCACACAGCCGTGCATGGAGAAGCGTCCGAGCTGCGGGCACCCGTGCGCGGCGGCGTGCCACGTGGGCGCGAGCTCGCCGTGCCCCAGCGCCGCACCCTGCCGCCGCGCCGTGCGCGCCACGTGCCCGTGCGGCCGGCGCCACGCGGACCGCCCGTGCTGCGATAACGCCCGGGACTATGCTAAGATGATGAGCGCTCTAGCCGCCACGAAGATGTCGGAAGGCGGTTCAGTCGACCTGTCAGAAGTACAGCGCCCTGGCAGTATGCTCAAAACGCTGGAGTGCGACGACGAGTGCCGCGTGGAGGCGCGCACGCGGCAGCTGGCGCTGGCGCTGCAGATCCGCAACCCCGACGTGTCCGCCAAGCTGGCGCCGCGCTACTCCGAGCACGTGCGCGCCACGGCCGCGCGCGAGCCCGCCTTCGCCGTCCAGATACACGACAAGCTCACCGAGCTCGTGCAGCTCGCCAAGAAGTCCAAACAGAAGACCCGAGCGCACTCCTTCCCATCGATGAACTGGCAGAAGCGTCAGTTCATACACGAGCTTTGCGAACACTTCGGCTGTGAGAGCGTCGCCTACGACGCCGAACCGAATAGGAACGTTGTAGCTACAGCTGACAAAGAAAAGTCGTGGCTGCCTGCTATGAGCGTGTTGGAGGTGCTGGCGCGCGAGGCGGGCAAGCGGCGCGTGCCCGGGCCCGTGCTGCGTGCGCCTGCGCATGCACACGCTACCGCCGCCGGCGCCGGAGCTGCAGCAGGCGCTACTCCTAAATCGGGCTGGGCAACGCTAACGTCGACCAACGCATGGGCCGCACGCAGCCAACCGAAGCCGCAGCAACCGCAGCAACCGCCTGCGGAAAAAATCGACTATTTCGACAACCCGCCCGACAACTAG
- Protein Sequence
- MSQWNNTYAYNNQYQAWNGDPNVQYVNQAYYPNRPEQANQYVSFNEFLSQMQTSGAPNASNYSNVQYENYPSRQYNYQNVPSTAQNPQLDSYGYAATTATVSSGTEAYPMNVQSQYNPVAANPNAYTNAMILKSNLTPTATEFVPKGSMMTPSSSTQNITEPVHDDSESRNNYSNVTEPRNHYNSMNDSRNNYPSVSEPRNASGSSSDTNWRERSQSSQQNTETSQKTESYQRPQEHPRNQESNGRHRDNNYRNNESNGRHHDSNNRNQESNSRNQELDNRQYESNSRQQDSSSRNYESNNRNCDSNNKRGQGKGNYKSKNKDDARTFYNSAISKDSQDVRNGRGETSGRGKNWVGTPRLRAIDRNNTEDEQYANTYLQGREDRMERDNRDRERENRDRDREREIREKDRDSRDIREKDRDNRDIRERDRGNRDIRDRDRDYRDIRDRDRDNRDSRDMDRDYRDVREMDRSNRDIRERDRDTKERERAIKSENVPSPARTKTKYGNDQVNKEMTQRERLTEQLDKGTLECLVCCDRVKQFDQVWSCCNCYHVLHLRCIRKWAMSSMVEGKWRCPACQNTNETIATEYRCMCGAVRAPEYQRGSTGAHTCGRACRRPRACPHPCTLLCHPGPCPPCQATVVKHCGCGVETRSVLCSSKLPQVCGRICGRTLLCGVHSCTKECHEGPCDICAETVEQVCYCPAAKSRSVACTADTGSCAHWSCGDTCGRVLACGAHVCRAPCHAPPCQPCQLLPQYVRSCPCGNTQLAKDSRKACTDPIPLCGNICAKPLQCGPAGDKHFCKLNCHEGPCPECPDKTVLQCRCGHSSREVPCADLPQMYNNVLCQKKCNKKLSCGRHRCRTVCCAATSHRCAVVCGRTLSCQTHRCEEFCHTGHCAPCPRVSFEELSCSCGAEVLLPPVRCGARAPACSAPCARARACRHPPHHSCHAGDCPPCVVLTTKRCHGDHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGKCTQPCMEKRPSCGHPCAAACHVGASSPCPSAAPCRRAVRATCPCGRRHADRPCCDNARDYAKMMSALAATKMSEGGSVDLSEVQRPGSMLKTLECDDECRVEARTRQLALALQIRNPDVSAKLAPRYSEHVRATAAREPAFAVQIHDKLTELVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPGPVLRAPAHAHATAAGAGAAAGATPKSGWATLTSTNAWAARSQPKPQQPQQPPAEKIDYFDNPPDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00810680; iTF_00925414; iTF_01118917; iTF_00071989; iTF_00038375; iTF_00121079; iTF_01247738; iTF_00123912; iTF_00375944; iTF_00274927; iTF_00274128; iTF_00364594; iTF_00908482; iTF_00784883; iTF_00172415; iTF_01441620; iTF_00786453; iTF_01425656; iTF_00384253; iTF_01094589; iTF_00302726; iTF_01193306; iTF_00727004; iTF_00043167; iTF_01028895; iTF_01027929; iTF_01440671; iTF_00177760;
- 90% Identity
- iTF_00810680;
- 80% Identity
- -