Basic Information

Gene Symbol
stc
Assembly
GCA_949699075.1
Location
OX453010.1:23834035-23863504[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 4.5e+04 -4.4 1.6 15 19 556 560 555 560 0.81
2 13 0.057 1.3e+03 0.8 1.5 2 10 588 596 588 596 0.92
3 13 4e-05 0.9 10.9 18.1 4 19 604 619 602 619 0.93
4 13 7.9e-08 0.0018 19.5 11.8 1 19 655 673 655 673 0.97
5 13 0.0011 25 6.3 16.0 1 19 714 732 714 732 0.98
6 13 2.8e-05 0.64 11.4 12.4 1 19 773 795 773 795 0.87
7 13 2 4.5e+04 -5.4 2.2 6 10 825 829 825 829 0.94
8 13 0.0036 80 4.7 7.4 1 11 835 845 835 846 0.95
9 13 0.046 1e+03 1.1 0.3 4 10 850 856 849 857 0.93
10 13 6.6e-06 0.15 13.4 15.0 3 19 864 880 862 880 0.92
11 13 0.00042 9.4 7.6 9.6 10 18 927 935 924 936 0.92
12 13 4.8e-08 0.0011 20.2 14.0 1 17 972 990 972 996 0.85
13 13 0.00019 4.2 8.8 4.4 1 14 1002 1014 1002 1016 0.95

Sequence Information

Coding Sequence
ATGTCTCAGTGGAACAACACATACGCTTACGACAACCAGTACCAAAACTGGAACGGCGACCCTAATTGTCAATATGTTAACCAGTCCTACTATCCCAATAGTGCAGACCAAGCTAATCAGTATGTGAGTTTTAATGAGTTTCTTTCTCAAATGCAAAACAATAGTGCACCTAACGCTGGCAACTATAGCAATGTTCAATATGAAAACTACCCTTCAAGACAATATAATTATCAGAATATACCTACCACCTCTCAGAATCCTCAGTTAGACAGTTATGGATATGCTGCAACCTCATCTAATGTCCCCAGTGGTGCTGAAGCATACCCAATGAATGTTCAAAGTCAATACAACCCAGTGGCAACCAATCCCAATGCTTACACAAACACAATGATACTCAAATCCAATCTAACTCCAACGGCTACCGAGTTTGTGCCAAAAAATTCTATGATGACACCTTCAACTAGCACTCAGAACATTCCTGAATCTAGTACtattaatgatgataatgaatatagaAATAATTATAGTAAAGTTAATGAAACTAAAAATCATTATAGTAGCATGAATGATTCAAGAAATAACTATTCTAATACGAGTGATCCTCTGAGTACTGCCAGCAGTGCATCAGACACTAATTGGAGGGAGAGAACACAGAGTTCTCAACAAAATAGTGAGACAAACCATAAAACCGAATCATGCCAACATCCCCAAGAAGTCCCTAGGAACCAAGAAAGCAATGGTCGTAACCGTGACAGTAGTTATCGCAGCAATGAATCAAATGGGCGTCATCATGATTCAAACAACCGTAATCAAGAATCAAGAAACCGCAATCAGGAATTAAGTAGCCGCAGCCAAGATTTAAGCAATCTCAGTCAAGAACCAGATGTTAGAGAGTATGAATCTAGTAGTCGCCAGCAAGATTCTAGTAGCCGTAGCCATGAATCTAATAACCGTAACTATGATTCTAGTAACAAAAGGGGCCAAACTAAAGCAAATAATAAGtcgaaaaataataaagatgATGCTCGTACCTTCTATAACAGTGCAATAAGTAAGGACAGTCAGGATGTGAGGAATGGAAGAGGGGAGGGTTCAGGGCGGGGAAAGAATTGGATTGGAAGTCAACGTCTTCGGGCAGTAGAACGCAACAGCACTGAAGATGAACAATATGCCAATACTTATTTACAAGGTAGAGAAGAGAGGGTGGAAAGAGATAATAGGGAGAGGGACAAAGATTACAGAGACAACAGGGAGAGGGGAAAAGATTATAGAGATAACAGAGAGAGGGATAGAGATTACAGAGATAACCGAGAAAGGGACAGGGATAACCGTGAGAGAGAAAGAGAGAACCGAGAGAGAGATAGAGAAAATCGAGAGAGGGAGAGAGACACCAAAGAGAGGGAGAGAGTTTTAAAGTCAGAAAATTTTCCCAGTCCTGCTCGatctaaaaacaaatattataataatgatcaAGTAAACAAAGAGATGACCCAACGTGAGCGTCTTACAGACCAACTGGACAAAGGTACACTGGAGTGTCTAGTTTGCTGCGATAGAGTCAAGCAATTTGACCAGGTGTGGTCTTGCAGCAACTGTTACCATGTATTGCATCTGAGATGCATCAGGAAGTGGGCTATGAGCAGTATGGTTGAGGGCAAATGGCGTTGCCCAGCCTGCCAGAATACAAACGAAGCAATTCCGACGGACTACCGCTGTATGTGCGGAGCGATGCGTGCTCCTGAGTATCAACGCGGCGCGGCCGGCGCGCACACTTGTGGCCGCTCGTGTCGTAGGGCGAGGGCCTGCCCGCATCCCTGCACACTACTGTGCCATCCCGGACCCTGCCCGCCGTGTCAGGCTACTGTTGTCAAGCAATGTGGTTGTGGTGCGGAAACCCGCTCAGTTCTGTGCAGCAGTAAGCTGGCTCAGGTGTGTGGTCGCGTGTGCGGCCGCTCGCTGCAGTGCGGCGTGCACAGCTGCGCCAGAGACTGCCACGAGGGACCCTGCGACACTTGTACCGAGACTGTCGAACAAATATGCTATTGTCCCGCGGCCAAGTCCCGCTCGGTGGCGTGCACGGCTGAGACGGGCACGTGTTCGAGCTGGTCGTGCGGCGACACGTGCGGGCACGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGCGCACTGCCACGCGCCGCCCTGCCAGCCCTGCCAGCTGCTGCCGCAGCATGTGCACACGTGCCCCTGCGGGAACACCAAGTTGGCCAAAGATTCGCGCAAATCGTGCACAGACCCAATCCCGCTGTGCGGCAACATCTGCGCCAAGCCGCTGCAATGTGGACCCGCAGGAGACAAACACTTCTGTAAACTCGACTGTCACGAAGGACCCTGTCCAGAATGCCCTGATAAGACTGTGCTGCAGTGTCGCTGCGGACACTCCAGTCGCGAGGTGCCCTGCGCCGACCTTCCCGAGATGTACAACAATGTGCTGTGCCAGAAAAAGTGTAATAAGAAACTGTCCTGCGGCCGTCATCGCTGCCGTACGGTATGTTGCGCTGCTACTTCGCACCGCTGTGCTGTCGTGTGTGGCCGCACGCTGTCATGCCAGACGCACCGTTGCGAAGAGTTCTGCCACACCGGACACTGCGCGCCCTGTCCGCGCGTCAGTTTCGATGAGCTGACCTGTGAATGCGGCGCCGAAGTGCTCCTGCCGCCTGTGCGGTGCGGCACCCGGCCCCCGGCTTGCACCGCCCCTTGCATCAGAGAGCGACCCTGCAAGCACCCTCCGCACCACTCCTGCCACTCTGGAGACTGCCCCCCCTGCGTGGTGCTTACCACCAAGCGGTGCCATGGCGACCACGAGGAGCGGAAAACGATACCATGTTCTCAAGACGAGTTCTCATGCGGCCTCCCATGTGGAAAGCCCCTGCCTTGCGGCAAGCATACCTGTATCAAGACTTGTCATAAGGGACCCTGCGATACTGGCAAATGCACTCAACCTTGCATGGAGAAGCGTAACAGCTGTGGTCACCCCTGCGCGGCTGCATGTCACACAGGGGCCGCCCCGGAGTCTCCAGCCTCCTTGTGTCCCAGCAGCTCTCCCTGTAGGCGCCTCGTGCGAGCCACCTGTCCCTGTGGACGCAGGCACGCCGATAGACCCTGCTGTGACAACGCGAGGGACTATGCCAAGATGATGAGCGCTCTAGCTGCCACGAAGATGTCAGAAGGTGGCTCCGTAGATCTGTCCGACGTCCAGCGTCCCGGCAAGATCCTCAAAACTCTAGAATGCGACGACGAGTGCCGCGTGGAGGCTCGCACGCGGCAGCTGGCGCTGGCGCTGCAGATCCGCAACCCCGACGTGTCGGCGAAGCTGGCGCCGCGCTACAGCGAGCACGTGCGCGCCACGGCCGCCCGCGAGCCCTCCTTCGCGCAGCAGACACACGAGAAGCTCACCGAGCTCGTGCAGCTCGCTAAGAAGTCAAAACAGAAGACCCGAGCGCACTCGTTCCCGTCGATGAACTGGCAGAAGCGTCAGTTCATCCACGAGCTGTGTGAGCACTTCGGCTGTGAGAGTGTTGCCTACGATGCTGAGCCGAACAGGAATGTGGTAGCCACCGCTGACAAAGAAAAGTCGTGGCTGCCCGCCATGAGTGTTCTGGAGGTGTTGGCTCGGGAGGCGGGCAAGCGTCGGGTGCCGGGGCCCGTACTGCGCGCGCCGCCCGGCGCCGCGGCCCTCGCCAGCTACAGCACGGCTACGCAGCCGCCCAACAAATCAACAAGCGGCTGGGCAACGCTCACCTCAACGAACGCATGGGCGGCCCGCAGCCAATCGAAACCGTCAGCCAGTCAACAGGCCAGCCAGCCAGCCAGTCAACAGGCCAGCCAGCCAGCCAGTCAACAGGCCAGCCAGCCGGTCAGTCAGCCGCCGCCGGTAGAGAAGATCGACTACTTCGACAACCCGCCCGACAACTAG
Protein Sequence
MSQWNNTYAYDNQYQNWNGDPNCQYVNQSYYPNSADQANQYVSFNEFLSQMQNNSAPNAGNYSNVQYENYPSRQYNYQNIPTTSQNPQLDSYGYAATSSNVPSGAEAYPMNVQSQYNPVATNPNAYTNTMILKSNLTPTATEFVPKNSMMTPSTSTQNIPESSTINDDNEYRNNYSKVNETKNHYSSMNDSRNNYSNTSDPLSTASSASDTNWRERTQSSQQNSETNHKTESCQHPQEVPRNQESNGRNRDSSYRSNESNGRHHDSNNRNQESRNRNQELSSRSQDLSNLSQEPDVREYESSSRQQDSSSRSHESNNRNYDSSNKRGQTKANNKSKNNKDDARTFYNSAISKDSQDVRNGRGEGSGRGKNWIGSQRLRAVERNSTEDEQYANTYLQGREERVERDNRERDKDYRDNRERGKDYRDNRERDRDYRDNRERDRDNRERERENRERDRENRERERDTKERERVLKSENFPSPARSKNKYYNNDQVNKEMTQRERLTDQLDKGTLECLVCCDRVKQFDQVWSCSNCYHVLHLRCIRKWAMSSMVEGKWRCPACQNTNEAIPTDYRCMCGAMRAPEYQRGAAGAHTCGRSCRRARACPHPCTLLCHPGPCPPCQATVVKQCGCGAETRSVLCSSKLAQVCGRVCGRSLQCGVHSCARDCHEGPCDTCTETVEQICYCPAAKSRSVACTAETGTCSSWSCGDTCGHVLACGAHVCRAHCHAPPCQPCQLLPQHVHTCPCGNTKLAKDSRKSCTDPIPLCGNICAKPLQCGPAGDKHFCKLDCHEGPCPECPDKTVLQCRCGHSSREVPCADLPEMYNNVLCQKKCNKKLSCGRHRCRTVCCAATSHRCAVVCGRTLSCQTHRCEEFCHTGHCAPCPRVSFDELTCECGAEVLLPPVRCGTRPPACTAPCIRERPCKHPPHHSCHSGDCPPCVVLTTKRCHGDHEERKTIPCSQDEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGKCTQPCMEKRNSCGHPCAAACHTGAAPESPASLCPSSSPCRRLVRATCPCGRRHADRPCCDNARDYAKMMSALAATKMSEGGSVDLSDVQRPGKILKTLECDDECRVEARTRQLALALQIRNPDVSAKLAPRYSEHVRATAAREPSFAQQTHEKLTELVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPGPVLRAPPGAAALASYSTATQPPNKSTSGWATLTSTNAWAARSQSKPSASQQASQPASQQASQPASQQASQPVSQPPPVEKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00809740;
90% Identity
-
80% Identity
-