Basic Information

Gene Symbol
stc
Assembly
GCA_905147745.1
Location
LR990526.1:3972253-3993826[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 3e+04 -4.5 1.6 15 19 638 642 637 642 0.81
2 14 0.044 6.7e+02 1.2 1.2 2 10 670 678 670 678 0.93
3 14 4.2e-05 0.63 10.8 18.1 4 19 686 701 684 701 0.93
4 14 2.6e-09 3.9e-05 24.3 11.9 1 19 737 755 737 755 0.97
5 14 0.0012 18 6.2 16.0 1 19 796 814 796 814 0.98
6 14 8.9e-05 1.3 9.8 11.1 1 19 855 877 855 877 0.87
7 14 2 3e+04 -5.5 2.2 6 10 907 911 907 911 0.94
8 14 0.0037 56 4.6 7.4 1 11 917 927 917 928 0.95
9 14 0.048 7.3e+02 1.1 0.3 4 10 932 938 931 939 0.93
10 14 1.2e-05 0.19 12.5 14.5 3 19 946 962 944 962 0.92
11 14 0.00044 6.6 7.6 9.6 10 18 1009 1017 1006 1018 0.92
12 14 4.8e-08 0.00072 20.2 14.0 1 17 1054 1072 1054 1078 0.85
13 14 0.00091 14 6.6 7.4 1 13 1084 1095 1084 1096 0.97
14 14 1.7 2.5e+04 -3.9 1.2 13 16 1109 1112 1104 1120 0.64

Sequence Information

Coding Sequence
ATGTCTCAGTGGAACAACACATATGCTTACAACAACCAGTACCAAAATTGGAACGGCGACCCAAATGTCCAATATGCCAACCAAACCTATTACCCCAATAGACCAGAGCAACCTAATCAGTATGTGAGCTTTAATGAGTTTCTTTCTCAAATGCAAAATAGTGGTGCGCCTAATGCTAGTAACTACAGCAATGTGCAATATGAAAACTATCCTGCAAGGCAATATAATTACCAGAATGCATCTTCCACTGCTCAAAACCCTCAGTTAGACAGTTATGGATATGCAGCAACCACAGCCAATGTGAACAGTGGCACTGAAGCTTACCCAATGAATGTTCAAAGCCAATACAACCCAGTGGCACCTAATTCTAATGCTTATACAAATGCTATGATACTCAAATCTAATCTCACTCCAACAGCTACAGAATTTGTGCCAAAAAGTTCCATGATGACACCTTCAACTAGCACTCAGAACATTCCTGAATCTGTAAACAATGATAGTGAAACTAGAAATAATTATAGTAATGTAACTGAAACTGGGAACCATTTCAGTAATGTCAATGATTCTCACAATAACTACCCCAGTGTAAATGAACCACGAAATGCTATAGGTAGTTCATCAGATACAAATTGGAGAGAGAGATCGCAGAGCTCACAACAAAATACTGAAACAAGCCAGATAACAGAATCACTCCAATATTCCCAAGAACTCCCTAAGAACCAAGAATCAAATGGCCGCCACCGTGATAGCAATTATCGCAATAATGAATCCAATGGGCGACATCATGAATCAAACAACCGCAATCATGAATCAAACAACCGCAATCAAGAATCAAACAATCGTAATCAAGAATCAAGCAACCGTAATCAAGAACCAGATAGCAGACAGTATGATTCAAGTAGTCGCCAACAGGATTCTAGCAGTCGAGGTTATGAAAGCAATAACCGTAACTATGATTCAAGCAGCAAAAGAGGCCAAGGAAAAGGTAATAAGTTAAAGAATAAGGATGATGCTCGTACCTTCTACAACAGTGCAATTAGTAAGGATAGTCAGGATGTGAGAAATGGAAGAGGAGAAGCTTCAGGTCGCGGAAAAAACTGGGTTGGAACTCCACGGCTTCGAGCAATGGATCGCAATAGCACAGAAGATGAACAATATGCCAATACTTATTTACAAGGCAAAGAAGAGAGGACAGAGAGAGATAACAGAGACAGGGAGAGCGAAAACCAAGAAAGGGACAGAGATAGGGATAGAGACACTCGTGAGAAGAACAGAGATAGCCGAGAAACCCATGAAAGGGAAAGAGATTACCGAGATTTCCGTGAGACAGATAGAGACAACAGAGATTTTCGCGGTAGAGAGAAAGGTAACCGAGATGTCCGTGAGAAGGATAGAGATAGTCGAGATATCCGTGAAAGGGGTAGAGACTATCAAGATATACGTGAAAGGGGTAGAGACTATCAAGATATACGTGAAAGGGATAGCGACAATAGAGACATCCGCGAAAGAGATAGAGATTACCGAGATGTCCGTGAGAGGGATAGAGACTCAAGAGATATTCGTGAGATGGATAGAGATTACCGAGATAATCGTGAAAGGGACCGAGGTAACCGAGATATTCGCGAAAGGGACAGAGATACTAGAGAGAGGGAGAGAGCAATAAAGTCTGAAAATGTTCCTAGTCCTGCTCGAACCAAAACTAAATATGGCAACGATCAAGTAAACAAAGAGATGACTCAGCGTGAGCGTCTTACTGAACAACTAGACAAGGGCACACTGGAGTGCCTCGTATGTTGCGACAGAGTCAAACAATTCGACCAGGTGTGGTGGTGCTGCAACTGTTACCATGTTCTGCACCTGAGATGCATCCGGAAGTGGGCCATTAGTAGTATGGTTGAGGGTAAGTGGCGCTGCCCAGCTTGCCAGAATACGAACGAAGCCATCCCTGCCGAATACCGCTGCATGTGCGGCGCGGTGCGCGCGCCGGAGTACCAGCGCGGCGCGGCCGGCGCGCACACGTGCGGCCGCGCCTGCCGCCGCCCGCGCGCCTGCCCGCACCCCTGCACGCTGCTGTGCCACCCCGGGCCCTGCCCACCGTGCCAGGCTACTGTGGTCAAACATTGTGGTTGCGGCGTAGAAACCCGCTCAGTTCTCTGCAGCAGCAAGTTGCCGCAAGTATGCAGTCGCGTCTGCGGACGTGCCCTGACATGTGGCGTGCATAACTGTGCCAAGGTCTGCCACGAGGGACCCTGTGATACATGTACTGAGATGGTTGAACAAGTATGCTACTGCCCCGCCGCCAAGTCGCGCTCGGTGGCGTGCACGGCGGACACGGGCGCGTGCAGCAGCTGGTCGTGCGGCGACTCGTGCGGCCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGCGCACTGCCACGCGCCGCCCTGCCAGCCCTGCCAGCTGCTGCCGGACTACGTGCACAGCTGTCCTTGCGGCAACACCAAGTTAGCGAAAGATTCACGTAAGACCTGCATGGACCCCATCCCTTTGTGCGGCAACATCTGTGCCAAGCCGCTACAGTGCGGGCCCGCCGGAGACAAACATTTCTGCAAACTTAACTGCCATGAAGGACTGTGTCCAGAATGTCCTGATAAGACAGTGCTGCAGTGCCGCTGCGGCCACTCCAGCCGCGAAGTGCTCTGCGCCGACCTGCCTGAGATGTACAACAATGTGCTGTGTCAAAAGAAATGCAATAAGAAACTGTCGTGCGGTCGGCACCGCTGCCGCACGGTGTGCTGCGCGGCCACGTCGCACCGCTGCGCCGTGGTGTGCGGCCGCACGCTGTCGTGCCAGACGCACCGCTGCGAGGACTTCTGCCACACCGGCCACTGCGCGCCCTGCCCGCGCGTCAGTTTCGAGGAGCTGTCGTGCGAGTGCGGCGCGGAGGTGCTGCTGCCGCCCGTGCGCTGCGGCGCGCGGCCGCCGGCCTGTGGCGCGCCGTGCGTGCGCGCGCGCGCCTGCCGCCACCCACCGCACCACTCCTGCCACTCGGGGGACTGTCCGCCCTGCGTCGTGCTCACCACCAAGCGCTGCCACGGGGACCACGAGGAGCGAAAAACAATACCGTGCTCCCAAGAAGAGTTCTCGTGCGGTCTTCCATGTGGGAAGCCGCTGCCTTGCGGAAAACATACCTGCATCAAGACTTGTCACAAGGGACCCTGTGACACTGGCAAATGCACCCAACCCTGCATGGAGAAGCGGCCCAGCTGCGGCCACCCGTGCGCGGCGCCGTGCCACGCGGGCGGCGGGCCGGAGCTGCGCGGGCCGGCGTGCCCCAGCGCGGGCCCGTGCCGCCGCGCCGTGCGCGCCACGTGCCCGTGCGCGCGCCGCCACGCCGAGCGGCCGTGCTGCGACAACGCCAGGGACTACGCTAAAATGATGAGCGCGCTAGCCGCTACGAAGATGTCAGAAGGTGGTACAGTCGACCTGTCTGAGGTACAGCGTCCTGGCAGTATGCTCAAAACTCTCGAATGCGACGACGAGTGCCGTGTGGAAGCCCGCACCCGCCAGCTGGCGCTGGCGCTGCAGATCCGCAACCCCGACGTGTCCGCCAAGCTGGCGCCGCGGTACAGCGAGCACGTGCGCGCCACGGCCGCGCGCGAGCCTGCCTTCGCGCACCAGATACACGACAAGCTCACCGAGCTCGTGCAGCTTGCTAAGAAGTCAAAACAAAAGACTCGAGCGCACTCCTTCCCGTCGATGAACTGGCAGAAGCGACAATTTATACACGAGCTCTGCGAACACTTCGGCTGCGAGAGCGTCGCCTACGATGCCGAGCCCAACAGGAACGTTGTGGCCACTGCTGATAAAGAAAAGTCCTGGCTGCCCGCCATGAGCGTGCTGGAGGTGCTGGCGCGCGAGGCCGGCAAGCGCCGCGTGCCCGGCCCCGTGCTGCGCGCGCCGGCCGCCGCGCGCGCGCGCGGCCCGCACGACGCGCCCGGCTCCAACACCAAATCGGGCTGGGCTACCCTTACCTCAACGAACGCCTGGGCCGCGCGCAGCCAACCGAAGCCACAGCAACCGCCTGTAGAGAAAATCGACTATTTCGACAACCCGCCTGAAAACTAG
Protein Sequence
MSQWNNTYAYNNQYQNWNGDPNVQYANQTYYPNRPEQPNQYVSFNEFLSQMQNSGAPNASNYSNVQYENYPARQYNYQNASSTAQNPQLDSYGYAATTANVNSGTEAYPMNVQSQYNPVAPNSNAYTNAMILKSNLTPTATEFVPKSSMMTPSTSTQNIPESVNNDSETRNNYSNVTETGNHFSNVNDSHNNYPSVNEPRNAIGSSSDTNWRERSQSSQQNTETSQITESLQYSQELPKNQESNGRHRDSNYRNNESNGRHHESNNRNHESNNRNQESNNRNQESSNRNQEPDSRQYDSSSRQQDSSSRGYESNNRNYDSSSKRGQGKGNKLKNKDDARTFYNSAISKDSQDVRNGRGEASGRGKNWVGTPRLRAMDRNSTEDEQYANTYLQGKEERTERDNRDRESENQERDRDRDRDTREKNRDSRETHERERDYRDFRETDRDNRDFRGREKGNRDVREKDRDSRDIRERGRDYQDIRERGRDYQDIRERDSDNRDIRERDRDYRDVRERDRDSRDIREMDRDYRDNRERDRGNRDIRERDRDTRERERAIKSENVPSPARTKTKYGNDQVNKEMTQRERLTEQLDKGTLECLVCCDRVKQFDQVWWCCNCYHVLHLRCIRKWAISSMVEGKWRCPACQNTNEAIPAEYRCMCGAVRAPEYQRGAAGAHTCGRACRRPRACPHPCTLLCHPGPCPPCQATVVKHCGCGVETRSVLCSSKLPQVCSRVCGRALTCGVHNCAKVCHEGPCDTCTEMVEQVCYCPAAKSRSVACTADTGACSSWSCGDSCGRVLACGAHVCRAHCHAPPCQPCQLLPDYVHSCPCGNTKLAKDSRKTCMDPIPLCGNICAKPLQCGPAGDKHFCKLNCHEGLCPECPDKTVLQCRCGHSSREVLCADLPEMYNNVLCQKKCNKKLSCGRHRCRTVCCAATSHRCAVVCGRTLSCQTHRCEDFCHTGHCAPCPRVSFEELSCECGAEVLLPPVRCGARPPACGAPCVRARACRHPPHHSCHSGDCPPCVVLTTKRCHGDHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGKCTQPCMEKRPSCGHPCAAPCHAGGGPELRGPACPSAGPCRRAVRATCPCARRHAERPCCDNARDYAKMMSALAATKMSEGGTVDLSEVQRPGSMLKTLECDDECRVEARTRQLALALQIRNPDVSAKLAPRYSEHVRATAAREPAFAHQIHDKLTELVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPGPVLRAPAAARARGPHDAPGSNTKSGWATLTSTNAWAARSQPKPQQPPVEKIDYFDNPPEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00809740;
90% Identity
-
80% Identity
-