Hnum006084.1
Basic Information
- Insect
- Heliconius numata
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_016802625.1
- Location
- JAEBDU010013267.1:178129-189265[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-76 1e-71 242.4 24.9 1 264 122 379 122 405 0.89 2 2 1 3e+04 -5.8 15.2 1 48 402 448 400 476 0.67
Sequence Information
- Coding Sequence
- ATGGGTGAGCGTTGTGAAATGGCTACTCCGGAAAACAGTGACGATGAGAGCGGAGATGCATTTACAGATGGTGATTTTGGTGATTCCGAGGAAGATACGGTGGTAGGAAATAATTTGATAAAAACTACACATATGCCGGTCAATGAAAGTGTAAATTCTGAAATTAAATTGAATAGTAGTATAGATTGTATAGACAATAGTTTAGATCAATCGAGTAGTGTACACGAGGACATTGACGATATTAGTGAAAATATGCAGCTAAATGACTTTACAAACGGTGATAATTCATCGGCAGACTTAGGAAGAGATTCACAAAGCGACAACGGCTCCATCGTTGGGATTCTTGGAGATCAACATAATCATGCGGAACAACGGCTGGCGGCGCGTCGTGCGGCGCGGGCAGAGGCGCGCGAGATCCGCATGCGGGAGCTAGAACGTCAGCAGAGAGAACAAGAAGACCATGCTGATAAGGCGTACGACATGTACGCAGAAACGGTGGGAAGAAGGACAGGCAGTCGGCTAGCGGCGTTAAGTCCCAGCGCAATGCACTCTCCTCGGCGTAGTTCAGAGGACTCGGACGATGTTCTTAGCGTCAAGGACCTTAGGCACGAGCTAAAAGAAGTAGAAGAGAAGTTCCGCAAGGCGATGATCCTTAATGCCCAATTAGACAATGACAAAGCTGCTCTTGGATACCAGCTCGAGTTGTTAAAGGATAGGATAGAGGAGTTACAGGAGGAATATGCGCAATTACAGCGCGAACACAAAGAAAAATGCTCATCGCACGAGCGTCTAAAACGTGAACACGCGTCCTTAGAACGCGAAGTGTCACTCGCGCGGGACGCAGTGCGCGCGCGGGACGCCGCCGCCGCGGCAGCGGGACGCGCTTTCGTGGAGGCCGCCGCCGCGCCCGACGCGCCGCCCGGCGACCGCTGCGGCAGCGTGCCGCCACTGGCGCTGGTGTCGCACACTTCGGAGCAACTGCTCAACGACGCGGGGGAGGGAACGCTAGATGTGCGGCTCGAGCGTCTAGCAAGTGCTAAAGCGGAATTAGAAAGCGAAGTGCGTAAACTCAAGCTGCAGTTAAACGACGAGCGTGCGGCGAGACAAAATGGCGTCGCGCATATGCACCGGGATGTTGATGGCGAGTTGGAAACCCTCCGTAAATCAGTATCGGAAGCTAAAGGTCGCGCTGCTCGAGCAGAAGCCGAGGCGGCCATACAAGCGGCGGCGGTCGCGCGGCTGGAGGCACAAGTCGTGCGACTAAAGGCCAGGCAGGACCACCAAGATGAGCACGAGGAAATGCTGAAGCAGGAGAGGCGGAAGTTGCAGAGGGAGGCGAGAGAAGCGCTAAACCGAGTCGAAGAACTAGAAACAGAAAACAGTCATCTAACAAAACGTCTTGACAAACTGAAGAACGCCAAGTCAGCTCTATTAAAGGACCTGTGA
- Protein Sequence
- MGERCEMATPENSDDESGDAFTDGDFGDSEEDTVVGNNLIKTTHMPVNESVNSEIKLNSSIDCIDNSLDQSSSVHEDIDDISENMQLNDFTNGDNSSADLGRDSQSDNGSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGSRLAALSPSAMHSPRRSSEDSDDVLSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHASLEREVSLARDAVRARDAAAAAAGRAFVEAAAAPDAPPGDRCGSVPPLALVSHTSEQLLNDAGEGTLDVRLERLASAKAELESEVRKLKLQLNDERAARQNGVAHMHRDVDGELETLRKSVSEAKGRAARAEAEAAIQAAAVARLEAQVVRLKARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00781041;
- 90% Identity
- iTF_00621251; iTF_00774505; iTF_00782658; iTF_00780267; iTF_00781041; iTF_00457248; iTF_00458066;
- 80% Identity
- -