Hsar020000.1
Basic Information
- Insect
- Heliconius sara
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_917862395.2
- Location
- OU860799.1:11879948-11891677[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-76 1.7e-71 241.4 22.5 1 264 122 379 122 405 0.89 2 2 1 2.4e+04 -6.7 14.5 11 162 412 460 402 479 0.44
Sequence Information
- Coding Sequence
- ATGGGTGAACGTTGTGAAATGGCTACTCCCGAAAACAGTGAAGATGAGAGTGGGGATGCATTTACAGATGGTGATTTTGGTGATTCTGAGGAAGAAACAGTAGTAGGGCATAATTTGATTAAAACTACACATATGCCGGTTAATGAAAGTGTTAATTCTGAAATTAAATTGAACAGCAGTATAGATTGTATAGACAATAGTTTAGACCAATCAACTTTTGTACATGAGGACATTGATGATATTAGTGAAAATATGCAGCTAAATGACTTTACAAACGGTGATAATTCATCGGCGGACTTAGGAAGAGATTCACAAAGCGACAACGGCTCCATCGTTGGAATTCTCGGAGATCAACATAATCATGCGGAACAGCGGTTGGCGGCGCGTCGTGCGGCGCGAGCAGAAGCGCGCGAGATCCGCATGCGAGAGCTAGAACGTCAGCAGAGAGAACAAGAAGACCATGCTGATAAAGCGTACGATATGTACGCAGAAACGGTGGGAAGAAGGACAGGAAGTCGGCTAGCGGCGTTAAGCCCCAGCGCAATGCACTCTCCTCGGCGTAGTTCAGAGGATTCGGACGATGTTTTTAGCATCAAGGACCTTaggCATGAGCTAAAAGAAGTAGAAGAGAAGTTCCGCAAGGCGATGATCCTTAATGCCCAATTAGACAATGACAAAGCGGCGCTTGGATACCAGCTCGAGTTATTAAAGGATAGGATAGAGGAGTTACAGGAGGAATATGCGCAATTACAGCGCGAACACAAAGAAAAATGCTCATTGCACGAGCGCCTAAAACGTGAACACGCGTCCTTAGAACGCGAGGTGTCACTCGCGCGGGACGCCGTGCGCGCGCGGGACGCCGCCGCCGCGGCTGCGGGACGCGCCTTCGTGGaggccgccgccgcgcccgacGCGCCGCCCGGCGACCGCTGCGGCAGCGTGCCGCCGCTGGCGCTCGTGTCGCACACGTCGGAGCAACTGCTCAACGACGCGGGCGAGGGGACGCTAGacGTGCGGCTCGAGCGTCTGGCAAGTGCTAAAGTCGAATTAGAAGGGGAAGTGCGGAAACTCAAGCTGCAGCTAAACGACGAGCGTGCGGCGAGACAAAATGGCGTCGCGCATATGCACCGAGATGTAGATGGCGAGTTGGAAACCCTCCGTAAATCGGTGTCAGAAGCAAAAGGTCGCGCGGCTCGAGCAGAAGCCGAGGCGGCCATACAGGCGGCGGCGGTCGCGCGTCTCGAGGCACAAGTCGCGCGACTGAAGGCCAGGCAGGACCACCAAGATGAGCACGAGGAGATGCTGAAGCAGGAGAGGCGGAAGCTGCAGAGGGAGGCGAGAGAAGCACTAAACCGAGTGGAAGAACTAGAAACAGAAAACAGTCATCTAACAAAGCGTCTTGACAAACTGAAGAACGCCAAGTCAGCTCTATTAAAGGACCTGTGA
- Protein Sequence
- MGERCEMATPENSEDESGDAFTDGDFGDSEEETVVGHNLIKTTHMPVNESVNSEIKLNSSIDCIDNSLDQSTFVHEDIDDISENMQLNDFTNGDNSSADLGRDSQSDNGSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGSRLAALSPSAMHSPRRSSEDSDDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSLHERLKREHASLEREVSLARDAVRARDAAAAAAGRAFVEAAAAPDAPPGDRCGSVPPLALVSHTSEQLLNDAGEGTLDVRLERLASAKVELEGEVRKLKLQLNDERAARQNGVAHMHRDVDGELETLRKSVSEAKGRAARAEAEAAIQAAAVARLEAQVARLKARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00781041;
- 90% Identity
- iTF_00781847;
- 80% Identity
- -