Hhim016427.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliconius himera
Gene Symbol
-
Assembly
GCA_013421065.1
Location
JAATLT010013273.1:15163-35705[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 6.2e-05 0.0047 17.5 2.2 1 23 402 424 402 424 0.97
2 20 0.0045 0.35 11.6 0.7 1 20 430 449 430 452 0.94
3 20 1.7e-05 0.0013 19.2 5.4 1 23 471 493 471 493 0.98
4 20 0.00014 0.011 16.3 4.7 1 23 499 521 499 521 0.99
5 20 2.7e-05 0.0021 18.6 5.3 1 23 527 549 527 549 0.97
6 20 8.8e-06 0.00067 20.1 7.3 1 23 555 577 555 577 0.97
7 20 5.7e-07 4.4e-05 23.9 2.9 1 23 583 605 583 605 0.97
8 20 7.8e-05 0.006 17.1 6.7 1 23 611 633 611 633 0.97
9 20 0.00018 0.014 16.0 5.6 1 23 639 661 639 661 0.97
10 20 3.8e-07 2.9e-05 24.4 1.9 1 23 667 689 667 689 0.98
11 20 3.7e-05 0.0028 18.2 8.1 1 23 695 717 695 717 0.98
12 20 6.1e-06 0.00047 20.6 6.6 1 23 723 745 723 745 0.98
13 20 5.2e-06 0.0004 20.8 5.8 1 23 751 773 751 773 0.98
14 20 3.1e-05 0.0024 18.4 6.1 1 23 779 801 779 801 0.97
15 20 1.7e-05 0.0013 19.2 7.1 1 23 807 829 807 829 0.97
16 20 2.4e-06 0.00018 21.9 6.0 1 23 835 857 835 857 0.98
17 20 2.3e-05 0.0018 18.8 7.8 1 23 863 885 863 885 0.97
18 20 1.9e-06 0.00015 22.2 4.1 1 23 891 913 891 913 0.96
19 20 0.00097 0.074 13.7 0.6 1 23 920 942 920 942 0.95
20 20 0.0013 0.1 13.3 3.8 1 23 953 975 953 975 0.99

Sequence Information

Coding Sequence
ATGAATCCGGATCATCATAGTATTAATACGGGTGGTGGCCAACCTTCAGGCAATTCCGAGTCTCAGAACCCAAGAGTTCAGTCGACACAGCAACAACAGCCGAcgcaaacaaataatttaacacCTACAACATCTGCTACCGATTTGAGAGTCAACTCGGCGGCGGTAAACGTTGCCCTGTCGAGCGTGGCTAAATACTGGGTGTTTACTAATTTGTTTCCCGGTCCATTGCCTCAAGTTTCTGTCTACGGTTTGCCTACTGGTGCAAGAATTGAAAATGGGAAACCTGTCCagGATCTTGGTCAAGCTCATGCAAGTATTTTGAATGGAGATCCTAACATTATATTAGGGCATGCTGGGCAACCTCAAGTTACAGTTTCCGCGGCAGGTCAACAAATACCTGTATCACAAATCATTGCTAATCAAGCAACACAAGGACATgAGACTCTGGTGGGGCATACACAGCAACAAGAAACTGCGAGTAGCAGCGCTCCGTTGGCAGTTGCACAAACCCAGCAGGGTCATCATTCACAGCAGCATATCATGCAGCAGCAGCTGATGGCGGCCGCGCGTCCCGAACACGCAAACCAACAGATACAACTGACAGTAAGCGAGGATGGCATAGTGACAGTGGTGGAGCCTGGCGGCACTGGCGGGAAGCTCGTCGAGAAGGAAGAGCTCCATGAAACAATCAAAATGCCTACAGACCACACGCTCACTGTGCACCAGTTGCAACAGATTGTTGGACATCAccagGTGATCGACAGCGTGGTGCGCATCGAGCAGGCGACGGGCGAACCCGCCAACATACTGGTGACGCAGAACCCCGACGGCACCACCTCCATAGAGACCAGCGCCGCTGACCCGCTCCTCgtgaaagatgaaaaaaatgtcGCTAAGATTGAGTCCGCCCAGTTTGCTATACCGGCggaaattaaagatattaaaggAATCGATTTAaagAGTGTTGGAGCTATGGGCATGGAGGGAGCGGTGGTCAAGATATCAGCGGCAACTGAGCACGACCTGCAACATGCCATGTATAAAGTGAATGTAGAAGATCTCTCGCAACTATTGGCCTACCACGAAGTATTTGGGAAACTTAATAATGATAATCCACAACAGCCTAAGGTAATAACTGAAGTAGACGTGGAGGCCAGCACCAGCGCCGCCATGTCGGAGGCGGAGTCGTCTCCCGGACATCACTCTTGCGACATATGCGGGAAGATATTCCAATTCCGATACCAACTTATTGTTCATagacgCTACCACGGAGAGAGTAAACCGTTTACGTGTCAAGTATGTGGGTCTGCATTTGCTAATCCGGTGGAACTATCAAAACACGGCAAATGTCACTTGGCCGGTGATCCTGCTGAGCGTCAAGCAAAGAGACTGGCACAAGATAAGCCCTACGCATGCTCCACTTGCCATAAGACATTCTCACGTAAGGAACACCTGGACAACCATGTACGGAGTCACACTGGGGAAACCCCTTACAGATGTCAATTCTGCGCGAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACCGGCGAGACGCCGCACCGCTGCGAGATATGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACCGGTGAAACGCCGCACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGGTCGCACACGAACGACACCCCGTTCAGGTGCGATCTGTGCGGGAAGTCGTTCACCAGGAAGGAACACTTCACCAATCACATATTGTGGCACACCGGTGAAACTCCACATCGATGCGACTTCTGCTCTAAAACCTTCACTCGTAAAGAGCACCTGTTAAACCATGTGCGTCAGCATACAGGGGAATCACCGCATCGATGCAATTTCTGTGCGAAGTCCTTCACGAGACGAGAACATTTGGTTAATCATGTGCGACAACACACCGGTGAAACGCCTTTCCAATGCGGATACTGTCCTAAAGCTTTTACAAGGAAAGATcatttagTAAATCATGTTCGTCAACACACGGGAGAGTCCCCACATAAATGTACATTCTGTACTAAATCTTTTACACGCAAAGAGCATTTAACAAATCATGTGCGACAACACACCGGGGAATCCCCACATCGATGTACATACTGCGCCAAATCTTTCACTAGAAAGGAACATCTTACAAATCATATAAGACAGCATACGGGCGAGACTCCCCACAAGTGCACGTACTGCCCGCGCGAGTTCTCGCGCAAGGACCACCTGCAGCAGCACGTGCGCCAGCACACGGGCGACGCGCCGCACACCTGCAGCTACTGCAGCAAGAGCTTCACCAGGAAGGAGCACCTCGTCACGCACGCCAGACAACATACCGGCGAAACTCCATTCAAATGCACGTACTGCTCGAAGTCGTTCTCGCGTAAGGAGCACCTCACGAACCACGTGCATCTTCACACTGGTGAAACACCGCACAAGTGTCCGTTCTGTACTAAGACCTTCTCTAGGAAGGAACACTTAACTAACCATGTcagAATACACACAGGCGAATCTCCTCACAGATGCGAGTTCTGTAACAAAACATTCACAAGAAAGGAACATTTGACCAATCACTTGAAGCAGCACACGGGTGACACGCCGCACGCGTGCAAGATATGCTCAAAACCGTTCACCAGGAAGGAGCATTTAGTAACGCATATGAGATCCCACAGTTGTGGAGAGAGACCACACGTTTGCGGTGAATGTGGAAAATCCTTCCCCCTCAAGGGTAATTTGCTGTTTCACGAGCGGTCACACAATAAAGGCGCTAACGCGTCAAACAAGACGTTCCGCTGTGACGTGTGCTCCAAGGAGTTTATGTGCAAAAGTAATTTAGCATCCCATCGAAGAACCCATACAGAAACGGGCGAAGGCACTACAACTACAGAGCCCACACCTGAAAATGAAGATTGCGGAGATTGCACCAAGTGCGATAAAGAGTCACCAGAAAGACCTGAGAGGAAACACGATACAAGagcGTCATCAGAAAGCAGAGCTACAGAAGCAACTGCTACACAAAATCCATCGCCAAATCCAAACCCAACTGTCATGCAAATTAACAGCCAGCAAGTGCGAACGGGTGCTGCAACGACCACGAGCGTATCAACGGGCACGTTCACCCACACTGCCACCACACAGCACCATGCCTCTACCAGTATAGCCCACCATCCTGTTACTGTGAATTACTAG
Protein Sequence
MNPDHHSINTGGGQPSGNSESQNPRVQSTQQQQPTQTNNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPLPQVSVYGLPTGARIENGKPVQDLGQAHASILNGDPNIILGHAGQPQVTVSAAGQQIPVSQIIANQATQGHETLVGHTQQQETASSSAPLAVAQTQQGHHSQQHIMQQQLMAAARPEHANQQIQLTVSEDGIVTVVEPGGTGGKLVEKEELHETIKMPTDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAADPLLVKDEKNVAKIESAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAATEHDLQHAMYKVNVEDLSQLLAYHEVFGKLNNDNPQQPKVITEVDVEASTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSKHGKCHLAGDPAERQAKRLAQDKPYACSTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPREFSRKDHLQQHVRQHTGDAPHTCSYCSKSFTRKEHLVTHARQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHLKQHTGDTPHACKICSKPFTRKEHLVTHMRSHSCGERPHVCGECGKSFPLKGNLLFHERSHNKGANASNKTFRCDVCSKEFMCKSNLASHRRTHTETGEGTTTTEPTPENEDCGDCTKCDKESPERPERKHDTRASSESRATEATATQNPSPNPNPTVMQINSQQVRTGAATTTSVSTGTFTHTATTQHHASTSIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00247403;
90% Identity
iTF_00778166;
80% Identity
-