Epru008070.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eucera pruinosa
Gene Symbol
salm
Assembly
GCA_028830335.1
Location
JAMYCR010000005.1:5677921-5690417[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 5.2e-06 0.00065 20.8 0.9 1 23 379 401 379 401 0.98
2 9 1e-05 0.0013 19.9 2.1 1 23 407 429 407 429 0.98
3 9 0.064 8.1 7.9 3.8 2 23 791 812 790 812 0.98
4 9 4.4e-08 5.6e-06 27.3 0.6 1 23 818 840 818 840 0.97
5 9 6.2e-05 0.0078 17.4 2.6 1 23 850 872 850 872 0.98
6 9 0.0022 0.27 12.5 1.9 2 23 1173 1194 1172 1194 0.97
7 9 0.037 4.7 8.7 1.0 1 14 1200 1213 1200 1214 0.92
8 9 6e-07 7.6e-05 23.7 2.1 3 23 1401 1421 1399 1421 0.96
9 9 2e-07 2.6e-05 25.2 0.9 1 23 1427 1449 1427 1449 0.98

Sequence Information

Coding Sequence
ATGCAGCTCATGAGATGGAGCATCACGCGCCGTCTCGAATGCCGGGGGATCAAGCATGGCACCTGCAGGAGCTCCAGACTCTCGTGTCCCCGATCTTCCGGAGAGGAAAATGACTTTACATCGGATGGTGAAGAGAGTGGTGGTGGAGGAGCTGGTGGCGACGAAGCCGTGGATCTTACGGCGTCCAGGTCCCATCAGGGTGACGAAGACGACAAGGATCAGGAAGATGCTCTGGAGGAGGATGAAGAGGAAGGTGTGGATGAGCAGGACGATCAAGAGGACGACGAGGAAGGATCGCGCAAGCAAATGCGTCATAGACAGGATGCGGAAAACAATAACAATTTCGTGGAGGGTGGCACGCCTGCCAGCTTATTCCCACCTGCTGGAACTAGTCACGTCACTCTGGAAGCTCTTCAAAACACGAAAGTGGCTGTTGCACAATTTGCTGCGACGGCCTTGGCCGGTGGCGCAGACAGCGAGGCGGCTCTCCAAGATTTGGCGCTGTTGCAAAGTACGTTGTACACTCTGCAACATCAGCAAGTGTTCCAGCTGCAGTTGATCAGCCAGCTGCAGCAGCAATTGTCCATCACGCACAATCAGTCGGTGCAACAGCAGGCTCCTGGCGAACCATCGGATAGCAAAGAAATATCTGCATCTCCCATTATTCAGCCTAAACCTCTGTCAAGTCTAACGTCGCCTCCATTATCACGTCCACCGAGTCATCATCAAACCTCGCCAGCTCCCATGACACCTAACGTGACTCAAGAACGACCTACACCAACCAGCAGTGCTTCTCCACTGAATCTTCCGCTGGCTTCGTCGAATACGACGGGCACAACTGCAACTACTAGCAGCAGTAGCCAGGTGCCGATGTCTCATCAAATACCGCCACTGTGCTCGATCAGTTCTTCCTTAGCTTCGTCAATAATAACCAACACCGATCCGCCACCATTGCACGAGCCGAACACTCTGGAGATGCTGCAGAAGAGAGCCCAGGAGGTATTGGACAACGCCAGCCAAGGACTACTGGCGAACAACCTGGCCGACGAGCTGGCGTTCAGGGGAGGAAAAGGCTCCCGCCTTTCTCCGTACGATTCAAAGTCCGGTAGCGGTCGCGGGGAGCCGTTCTTCAAGCATCGATGCCGCTATTGCGGCAAGGTGTTCGGCAGCGACTCAGCACTTCAGATCCACATACGATCGCACACAGGTGAGCGACCCTTTAAATGCAACGTCTGCGGCAGCCGCTTCACCACGAAAGGGAACCTGAAGGTCCACTTCCAGAGGCATACGGCCAAGTTTCCACATGTTAAGATGAACCCGAATCCCGTTCCGGAACACCTGGACAAGTACCATCCACCCCTGCTACAGCAAATCGCCTCTGGTCAGAGACCGATGCCGTCcccgccgccaccgccgccttCTCACCATCCCTCTTTTCACCCGGCGGCGGCGCACGGTTTTTTACCTCCTCAGCCACCCCTGCCTATCAGTTTAGCCCTTCCCAGTATGCCACCCCTGTACAGATCGCCGGTTGTCGCTCATCGGGACGATCAGGACGTGCCGGAGAACCTAAGTAAGCCCGTTACCACTGCCCCGACCACGTCCCCACATTCCCCCGCGGTTGTGTCGAACTCTCGTCATTCCTTTCACGACAATCACCAACAACAAAAGCAGCAGCTCGAGCAGAGGGACGAGATCAAGCTCGAACAGCGGTCGCCAATGCAGGAGCAGTACCAACAACAACGGCCTACAAGCCAGGAAGCCACTGAAAGGATAACTCCGAAAAAAGAACCGGAGGAGGCGGAGGAACCCACGGAGGAGGAGAGCGAAGATTTCGAAGAAACAACTAGACGGTATTTAAATTCACCCCAATCCTCCGCCAATCCACCCTCTCAACCGCAAACTTATGAAGACTGTAGTATGGATAGCAAAATAAGCGGTCGACTCGAAGGAGACGGCGACATGGAAGTTGATGAGGAGATCGAGGAGCAACCTGAGAATTTATCCGGTCGGGGAACCATGAATCGTTTGCCCCAGCACATTGTCGCGTATCCTGGAGCTTCCCCTGCGAGCAGTAGTGCGAGCAGTGGAAGTCTTCAAACTTCCTTCGCGGGAATTCTGTTCCCAGGGCCACCTGCGCATCACCAAATACCCCATCATCCGGTGCCGACGGTTGTAAACACGCCCGCAGTCTCGACCAACGAAATGATCGATCCGGCCAAAGATCCGGCTATCTATTCCAGCTTGCTACCGCGACCAGGCAGCAACGACAACTCCTGGGAAAGTTTGATCGAGATAACGAAGACCTCGGAAACGTCCAAGTTGCAGCAGTTAGTCGACAACATCGAACACAAACTGACTGATCCCAACCAGTGCGTAATCTGCCACAGGGTACTTTCTTGCAAAAGTGCTCTACAGATGCATTACAGGACCCACACGGGTGAACGTCCGTTCAAGTGCAAGATTTGCGGTCGGGCTTTCACCACCAAAGGTAACTTGAAGACTCATATGGGCGTGCACAGGGCAAAACCACCTCTCAGAGTGCTACATCAGTGTCCTGTCTGCCACAAGAAATTCACAAACGCACTGGTCCTGCAGCAACACATACGGTTGCACACTGGTGAGCCAACGGAACTCAGTCCGGAACAAATCCAAGCCGGCGAGGTGAACGAGTTTCCACCAGGTTATCCGCATCACCCGTTAGCCTCATTCCTTCCGCAAGGTTTTCCGCCAATTCATCCTGCCGGAGCTGGCTTCCCACTAGGCTTTCCTCCGACTCGACATCAGGTGCTGGAGAGACAGCCCCAAGAAAATGACGTGGACATAAAAGAAGAGTCTCAGCAGCAGCAACaccaacagcaacaacaacagcaacagagGTATCCAGAGGAGCATAGCGAGGAAGCGGATGACCAGGAAGACGAGGAGGAAGACCGTAGAGAGGAAGATGAAAGATGCGATGTGAATCGCGACTGTCGTGGTGATGTAGAAGATGAACAGGATCGAGAGAGCGAAGAAAATGAACATAAAGATAGCTTACTGCCTAGCTTCTCCACTTCCCTCGCTGCTCTAGAGAACCAAGTGCGAACGATCACCACGACAGCCGCGTCGACAATAGGAAACGCTGCTAGGTCGCCGTCGTTTCATCGCTACAATGGCAGCGAGAAAAGCAACAGTCCTCCGAATCCCGGCGCACCGTTGGATTTGACTCCTCGAGCATCGTCCACTCCAGCTTCCGTGGCGTCGGTCCCAACGCCGCCTCCCCAGGCCGCGACGCATCATCCACATCCATTCGGCATGTTCGCAGGCCTGCTGCAAGCAGTCTCTTCGTCGCCATCTACCAGCAGCATTGGATCGTCGAGCATAAACAGTGTGAGCTCGATGAACGCCGTGACTCCCGGAAGCGGTGCCGCCGGACCCCTGGCTTCCCTGACCACGTCAGCCGTGTTGGCTGCCACGTCGACCTACAACCCGCTCGGCCTGGCTGTCGGAGGGCCAGCAGTGCGTGGAAACACCACATGTAATATCTGCTACAAGACATTTGCGTGCAACTCCGCCCTGGAGATTCATTACCGGAGCCATACGAAGGAACGACCTTTCAAATGCAGCATATGTGACAGAGGATTTTCCACTAAGAACGATGGTTCCGGGCAGCAAGCATGCATCTGTGCGTCTCAACCATTGCCTGCTAACAGTTTGATCACTTCACCCGATCCTCAATACGGATCAGAGTGCACCAGTAGTCGAGAAAAAGCGGCAAAACGCAGGCGGCGGCGGCGACCTGAGGAGCGGAAGAACCGGGGGCGGAAAGGAGCTGGAGGGGGGCGGGGGCTAACGCCTGTCTATCCTGCCATCCGCCTACCCCCGCTGATGTCACCCGCCCTCGGACTTCTACCCTCGGCGCACGGCCTCCTGGGGAACATGAAGCAGCATATGTTGACTCACAAGATCCGCGACATGCCGCCTCATCTGTTCAGCGATTCGAAACAGCAACACCAACAGCAGTCTCAAGAACACGAAACCTCAAGAAGTCCAATGTGCCCGGAGGATTCAAGCTTACCACCACCCCCGCCGCCTCCACCGCCTCCTCCACCAATGCCACCGACCACCATGGAGCAAAGCATCTCCGTGAAGAGATCCCCATCTGAAGGAGAGCTGCCAGCACCAAAGAGACCAGCCAGCGTGCCGAGCAAACACTTGTGCCAGATTTGCAATAAGAATTTCTCCTCATCTTCGGCGCTCCAGATCCATATGAGAACTCACACAGGCGACAAACCGTTCCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGCAATCTCAAGGTACACATGGGCACTCATATGTGGACCAACGGAGCCTCTCGACGAGGTCGTCGAATGTCCCTGGATCTGCCTCCCCTACCCATCACCCCCAAGGACTCGGAGTTCCTTCAGCGACGACCGGATCTCTTTTACCCGTATCTACCCGCGCCCTTCCTTAACGGCGTGCAACAAAAACTGAACGAGATCTCGGTAATTCAAAGTAACAACGGGTTGCCGAGCCACTCGGTAGCCGCTGGAAAGTACGCTGGATTATTCGGCTCGGTGTACGCAGCTGGGGCTGGATTCCCTCTGGATAAGCAACCGATGGCGGCAACTAGTAACGGACCACTTTTGGATGGAAAATCTTCGATCCCAACCGGGTCTATGCTCTTCCAGACACCGTCGCCCTCTCACTCTCCTGGTACGCCTGGATCGAACGGTAGCAATCAGAACAGTGCTAGCGTACCCTCGTGGACTGGAGATGCTCTTCAGCACCATTTCGACAGGGAGCCACCTGCTAGGTCAGAGGGGAATTCAACGCCACCTACAGCTCGACTTCCGCCACCTCCGACAGCCAGGGGCGAAGGACTGGCCACGTGA
Protein Sequence
MQLMRWSITRRLECRGIKHGTCRSSRLSCPRSSGEENDFTSDGEESGGGGAGGDEAVDLTASRSHQGDEDDKDQEDALEEDEEEGVDEQDDQEDDEEGSRKQMRHRQDAENNNNFVEGGTPASLFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHNQSVQQQAPGEPSDSKEISASPIIQPKPLSSLTSPPLSRPPSHHQTSPAPMTPNVTQERPTPTSSASPLNLPLASSNTTGTTATTSSSSQVPMSHQIPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRLSPYDSKSGSGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPSHHPSFHPAAAHGFLPPQPPLPISLALPSMPPLYRSPVVAHRDDQDVPENLSKPVTTAPTTSPHSPAVVSNSRHSFHDNHQQQKQQLEQRDEIKLEQRSPMQEQYQQQRPTSQEATERITPKKEPEEAEEPTEEESEDFEETTRRYLNSPQSSANPPSQPQTYEDCSMDSKISGRLEGDGDMEVDEEIEEQPENLSGRGTMNRLPQHIVAYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPHHPVPTVVNTPAVSTNEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTELSPEQIQAGEVNEFPPGYPHHPLASFLPQGFPPIHPAGAGFPLGFPPTRHQVLERQPQENDVDIKEESQQQQHQQQQQQQQRYPEEHSEEADDQEDEEEDRREEDERCDVNRDCRGDVEDEQDRESEENEHKDSLLPSFSTSLAALENQVRTITTTAASTIGNAARSPSFHRYNGSEKSNSPPNPGAPLDLTPRASSTPASVASVPTPPPQAATHHPHPFGMFAGLLQAVSSSPSTSSIGSSSINSVSSMNAVTPGSGAAGPLASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCSICDRGFSTKNDGSGQQACICASQPLPANSLITSPDPQYGSECTSSREKAAKRRRRRRPEERKNRGRKGAGGGRGLTPVYPAIRLPPLMSPALGLLPSAHGLLGNMKQHMLTHKIRDMPPHLFSDSKQQHQQQSQEHETSRSPMCPEDSSLPPPPPPPPPPPPMPPTTMEQSISVKRSPSEGELPAPKRPASVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPSHSVAAGKYAGLFGSVYAAGAGFPLDKQPMAATSNGPLLDGKSSIPTGSMLFQTPSPSHSPGTPGSNGSNQNSASVPSWTGDALQHHFDREPPARSEGNSTPPTARLPPPPTARGEGLAT