Basic Information

Insect: Bombus muscorum
Gene Symbol: salm
Assembly: GCA_963971185.1
Location: OZ020136.1:17315922-17326886[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.2e-06 0.00058 20.7 0.9 1 23 379 401 379 401 0.98

2 9 1e-05 0.0011 19.8 2.1 1 23 407 429 407 429 0.98

3 9 0.065 7.2 7.9 3.8 2 23 812 833 811 833 0.98

4 9 4.5e-08 4.9e-06 27.2 0.6 1 23 839 861 839 861 0.97

5 9 6.3e-05 0.0069 17.4 2.6 1 23 871 893 871 893 0.98

6 9 0.0022 0.24 12.5 1.9 2 23 1217 1238 1216 1238 0.97

7 9 0.037 4.1 8.6 1.0 1 14 1244 1257 1244 1258 0.92

8 9 6e-07 6.7e-05 23.7 2.1 3 23 1445 1465 1443 1465 0.96

9 9 2.1e-07 2.3e-05 25.2 0.9 1 23 1471 1493 1471 1493 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.2e-06	0.00058	20.7	0.9	1	23	379	401	379	401	0.98
2	9	1e-05	0.0011	19.8	2.1	1	23	407	429	407	429	0.98
3	9	0.065	7.2	7.9	3.8	2	23	812	833	811	833	0.98
4	9	4.5e-08	4.9e-06	27.2	0.6	1	23	839	861	839	861	0.97
5	9	6.3e-05	0.0069	17.4	2.6	1	23	871	893	871	893	0.98
6	9	0.0022	0.24	12.5	1.9	2	23	1217	1238	1216	1238	0.97
7	9	0.037	4.1	8.6	1.0	1	14	1244	1257	1244	1258	0.92
8	9	6e-07	6.7e-05	23.7	2.1	3	23	1445	1465	1443	1465	0.96
9	9	2.1e-07	2.3e-05	25.2	0.9	1	23	1471	1493	1471	1493	0.98

Sequence Information

Coding Sequence: ATGCAGCTCATGAGATGGAGCATCACGCGCCGCCTCGAATGCCGCGGCATCAAGCAAGGAATCTGCGGACCCTCCAGACTCTCGTGCGCACGATTTTCCGGTGAAGAAAATGAGTTTACGTCGGATGGCGAGGAGAGTGGCGGTGGAGGAGTCGGCGGAGACGAAGCGGTGGACCTCACGGCAGCCAGGTGCCATCAGGGCGAGGAGGACGACAAGGATCAGGAAGACGCTTTGGAGGAGGATGAAGAGGAAGGCGTGGACGAGCAGGACGAGCAAGAGGACGACGAGGAAGGATCGCGCAAGCAGATGCATCACAGGCAGGATGCGGAGAACAACAACAATTTCGTAGAAGGTGGCGCCGCTGGCAGCCTGTTCCCGCCCGCTGGGACTAGTCACGTCACCCTGGAAGCACTGCAGAACACGAAAGTGGCGGTGGCTCAGTTCGCGGCGACGGCGTTGGCCGGAGGCGCGGACAGCGAGGCCGCTCTGCAGGACTTGGCGTTGCTTCAAAGCACCCTGTACACTTTGCAACATCAGCAAGTGTTTCAACTGCAGCTGATCAGCCAACTGCAGCAGCAACTGTCCATCACGCACAATCAGTCGGTGCAACAGCAAGGCCCGGGCGAGCCGTCGGATAGCAAGGAGATATCTCCGTCGCCGATCATCCAGCCTAAACCTTTGTCGAGCCTAACGTCGCCTCCGTCGTCGCGTCCACCGAGTCATCGGCAAACCTCGCCGGCTCCCGTGACGCCGAACCTGGCTCAGGAAAGACCCACGCCGACCAGCAGCGCGTCCCCGTTGAATATCCCGTTGGCCTCGTCGAACGCGACCGGCACGACCTCGACTACCAGTACCAGTAGCCAGATGCCGATGTCTCATCAGATACCGCCTCTCTGTTCGATCAGTTCTTCCCTAGCTTCGTCCATCATAACCAACACCGATCCGCCACCGTTGCACGAGCCCAACACTCTGGAGATGCTGCAGAAGAGAGCGCAGGAGGTGCTGGACAACGCGAGCCAGGGACTTCTGGCGAATAACCTGGCCGACGAGCTGGCGTTCAGGGGTGGAAAAGGCTCCCGTCTCTCCCCGTACGATTCAAAGTCCGGTAGCGGTCGCGGCGAGCCATTCTTCAAGCACCGATGCCGTTATTGCGGCAAGGTGTTCGGCAGCGACTCGGCGCTTCAGATCCACATACGATCGCACACAGGTGAGCGACCCTTTAAATGCAACGTCTGCGGCAGCCGCTTCACCACGAAAGGGAACCTGAAGGTCCACTTCCAGAGGCATACGGCCAAGTTTCCACATGTTAAGATGAACCCGAATCCCGTTCCGGAACACCTGGACAAGTACCACCCACCCTTGCTACAACAAATCGCCTCCGGTCAGAGACCGATGCCGtcaccgccgccgccaccaccTTCTCACCATCCCTCTTTTCATCCGGCGGCAGCGCACGGTTTCTTACCTCCTCAGCCGCCCTTGCCGCTCAGTTTAGCCCTTCCCGGTATGCCACCCTTGTACAGATCGCCGGTTGTCGCTCATCGGGACGATCAGGACGTGCCGGAGAACCTGAGCAAGCCCGTTACCACTGCCCCGACCACCTCGCCACATTCCCCCGCGGTTGTGTCCAATTCTCGTCATTCCTTTCACGACAATCACCATCACCACCATCACCACCACaaccaacaacaacaacaacaacaacaacaacaacaacaacatcaAAAGCAGCAGCTCGAGCAGAGGGACGAGATGAAGCTGGAGCAGCGATCGCCTATGCAGGAACAATACCAGCGACAGCAACGATCTATGAGCCAGGAACCGACCGAGAGGATAACGCCGAAGAAAGAGCCGGAGGAGGCCGAGGAGCCCACGGAGGAGGAGAGCGAGGATTTCGAGGAGACGACCAGACGGTATTTAAATTCACCCCAATCCTCCGTCAATCCACCCTCTCAACCGCAGACTTACGAAGACTGTAGCATGGACAGTAAGATGAGCGGTCGATTGGAGGGAGACGGCGACATGGAAGTCGACGAGGAGATCGAGGAGCAGCCGGAGAATTTGTCCGGTCGTGGAACCATCAATCGTTTGCCGCAACACGTTGTCGCGTACCCCGGCGCCTCCCCTGCGAGTAGTAGCGCGAGCAGTGGAAGCCTTCAAACATCGTTCGCGGGAATTCTGTTCCCAGGGCCACCGGCGCACCATCAAATACCCCATCACGCCGCACCACCAGCCGTAAACGCGTCCACCGCCGTCTCTACCAACGAGATGATCGATCCGGCCAAGGATCCGGCTATCTATTCCAGTCTGTTGCCACGGCCGGGCAGCAACGACAACTCCTGGGAAAGTTTGATCGAGATAACCAAGACCTCGGAAACGTCCAAATTGCAGCAGTTGGTCGACAACATCGAGCACAAGCTGACCGATCCTAACCAGTGCGTTATCTGCCACCGTGTGCTGTCCTGCAAGAGCGCACTGCAGATGCATTACAGGACTCACACGGGCGAGCGTCCGTTCAAGTGCAAGATCTGCGGCCGAGCGTTTACCACCAAGGGTAACTTAAAGACTCACATGGGCGTCCACAGGGCGAAACCGCCGCTCAGAATGTTGCATCAGTGCCCCGTTTGTCACAAGAAATTTACCAACGCGTTGGTGCTTCAGCAGCACATACGATTGCACACCGGCGAGCCAACGGAGCTCAGTCCGGAGCAGATTCAAGCCGGCGAGGTGAACGAGTTCCCGCCTGGTTATCCGCACCATCCGTTGGCGTCGTTCCTTCCTCAAGGCTTTCCACCGATTCACCCCGCGGGACCTGGATTCCCGTTAAGCTTTCCTCCAACTCGTCAACAACTGGAGAGACAGGCTCAGGAAAACGACATCGACGCCAAGGACGAGCCTCAACAGCAGCATCATCAACAACAACAGCATCAGCATCAACACCAGCaccagcagcagcagcaacaacaacaacagcagcagcagcagcagcagcagcaacagcatcAGGCAAGGTACGCGGAGGAGCACAGCGAGGAAGCGGACGACCAGGAGGACGAGGAGGACGATCGCAGAGAGGAGGACGAGAGATGCAATCGCGACGCGAGTCGCGGCGACCTAGAGGACGAGCAGGATCACGAAAGCGAAGAAAACGAGCACAAGGACGTGTCTTTGCCCAGTTTCTCGACTTCGTTGGCCGCTCTCGAGAATCAGGTGCGAACGATCACGACGACAGCCGCGTCGACGATAGGAAACGCAGCCGCCAGGTCGCCGCCGTTTCACCGTTACAACGGCAGCGAGAAGAGCAACAGTCCGCCGAATCCTGGCGCGCCGTTGGATTTGACGCCTCGGGCATCGTCCACTCCGGCCTCGGTGGCGTCAGTGCCAACGCCACCTCCGCAAACCACCACCCACCATCCGCATCCGTTCGGCATGTTCGCAGGCCTGCTGCAAGCGGTCTCATCGTCGCCGTCTACCAGCAGCATCGGTTCGTCGAGCATAAACAGCGTCAGCTCGATAAACGCCGTGACTCCTGGAAGCGGCGCCGCCGGGCCCTTGGCTTCCCTGACCACGTCAGCCGTGTTGGCTGCTACGTCCACCTACAACCCGCTCGGCCTGGCTGTCGGAGGGCCAGCAGTGCGTGGAAACACCACGTGTAATATCTGCTACAAGACATTTGCGTGCAACTCCGCGCTGGAGATCCATTACCGGAGCCACACGAAGGAACGACCTTTCAAATGCAGCATATGCGACAGAGGCTTTTCCACAAAGAACGATGGTTCCGGGCAGCAAGCATGCATCTGTGCGTCTCAACCGTTGCCCGCTAACAGTTCGATCACTTCACCCGATCCTCAATTTGGATCAGCGTGCGCCAGTAGTCGAGAAAAAGCGAAACGCAGGCGGCGGCGGCGACCTGAGGATCGGAAGAACCGGGGGCGGAAAGGAGCCGGAGGGGGGCGGGGGCTGACGCCTGTCTATCCTGCCATCCGCCTACCCCCGCTGATGTCGCCCGCCCTCGGACTTCTACCCTCGGCGCACGGCCTCCTGGGGAACATGAAGCAGCACATGCTGACTCACAAGATCCGCGACATGCCGCCGCATTTGTTCAGCGACTCGAAGCAGCAACACCAACAGCAATCTCAGGAGCACGAAACCTCGAGAAGTCCGATGTGCGCGGAGGATTCGAGCTtaccgccgccgccgccaccgccgccacCGCCTCCTCCACCGATGCCACCGACTTCGATGGAACAAAGCATCGCCGTGAAGAGATCGCCGCCAGAGGGGGAGCTGCCAGCACCAAAGAGACCAGCCAGCGTGCCGAGCAAACACTTGTGCCAGATTTGCAATAAGAATTTCTCCTCATCTTCGGCGCTGCAGATCCATATGAGAACTCACACAGGCGACAAACCGTTCCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGCAATCTCAAGGTACACATGGGTACTCATATGTGGACCAACGGAGCTTCTCGACGAGGTCGTCGAATGTCCCTGGATCTGCCTCCCCTACCCATCACTCCCAAGGACTCGGAGTTTCTGCAGCGTCGGCCGGATCTTTTCTATCCGTATCTACCCGCGCCATTCCTTAACGGCGTGCAGCAGAAGCTGAACGAGATCTCGGTGATTCAAAGCAACAACGGTCTACCGAGTCACTCCGTGGCCGCTGGCAAATACGCTGGATTATTCGGCTCGGTGTACGCGGCTGGAGCTGGCTTCCCTCTGGACAAGCAACCGATAGTGGCGGCGAACAGTAACGGACCGCTGCTCGACGGCAAGTCCTCGATCCCGTCTGGGTCCATGCTCTTCCAAACGCCATCGCCCTCCCACTCGCCAGGCACGCCAAGTTCCAACGGAAGCAATCAGAGCAGCGCGAACGTGTCCTCGTGGACAGGGGACGCTCTTCAACATCATTTCGACAGGGAGCCGCCGACCAGGTCGGAGGGCAACTCGACTCCACCTTCGGCTCGACTTCCGCCGCCCGCGGCGGCCAGGGGTGAAGGACTGGCCACGTGA
Protein Sequence: MQLMRWSITRRLECRGIKQGICGPSRLSCARFSGEENEFTSDGEESGGGGVGGDEAVDLTAARCHQGEEDDKDQEDALEEDEEEGVDEQDEQEDDEEGSRKQMHHRQDAENNNNFVEGGAAGSLFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHNQSVQQQGPGEPSDSKEISPSPIIQPKPLSSLTSPPSSRPPSHRQTSPAPVTPNLAQERPTPTSSASPLNIPLASSNATGTTSTTSTSSQMPMSHQIPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRLSPYDSKSGSGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPSHHPSFHPAAAHGFLPPQPPLPLSLALPGMPPLYRSPVVAHRDDQDVPENLSKPVTTAPTTSPHSPAVVSNSRHSFHDNHHHHHHHHNQQQQQQQQQQQQHQKQQLEQRDEMKLEQRSPMQEQYQRQQRSMSQEPTERITPKKEPEEAEEPTEEESEDFEETTRRYLNSPQSSVNPPSQPQTYEDCSMDSKMSGRLEGDGDMEVDEEIEEQPENLSGRGTINRLPQHVVAYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPHHAAPPAVNASTAVSTNEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRMLHQCPVCHKKFTNALVLQQHIRLHTGEPTELSPEQIQAGEVNEFPPGYPHHPLASFLPQGFPPIHPAGPGFPLSFPPTRQQLERQAQENDIDAKDEPQQQHHQQQQHQHQHQHQQQQQQQQQQQQQQQQQQHQARYAEEHSEEADDQEDEEDDRREEDERCNRDASRGDLEDEQDHESEENEHKDVSLPSFSTSLAALENQVRTITTTAASTIGNAAARSPPFHRYNGSEKSNSPPNPGAPLDLTPRASSTPASVASVPTPPPQTTTHHPHPFGMFAGLLQAVSSSPSTSSIGSSSINSVSSINAVTPGSGAAGPLASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCSICDRGFSTKNDGSGQQACICASQPLPANSSITSPDPQFGSACASSREKAKRRRRRRPEDRKNRGRKGAGGGRGLTPVYPAIRLPPLMSPALGLLPSAHGLLGNMKQHMLTHKIRDMPPHLFSDSKQQHQQQSQEHETSRSPMCAEDSSLPPPPPPPPPPPPPMPPTSMEQSIAVKRSPPEGELPAPKRPASVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPSHSVAAGKYAGLFGSVYAAGAGFPLDKQPIVAANSNGPLLDGKSSIPSGSMLFQTPSPSHSPGTPSSNGSNQSSANVSSWTGDALQHHFDREPPTRSEGNSTPPSARLPPPAAARGEGLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118182;
90% Identity: iTF_00676196;
80% Identity: -