Basic Information

Insect: Lasioglossum calceatum
Gene Symbol: salm
Assembly: GCA_963966675.1
Location: OZ016544.1:11963487-11977985[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.2e-06 0.00057 20.8 0.9 1 23 378 400 378 400 0.98

2 9 1e-05 0.0011 19.9 2.1 1 23 406 428 406 428 0.98

3 9 0.065 7.1 7.9 3.8 2 23 789 810 788 810 0.98

4 9 4.5e-08 4.9e-06 27.3 0.6 1 23 816 838 816 838 0.97

5 9 6.3e-05 0.0068 17.4 2.6 1 23 848 870 848 870 0.98

6 9 0.0022 0.24 12.5 1.9 2 23 1171 1192 1170 1192 0.97

7 9 0.032 3.5 8.9 1.0 1 14 1198 1211 1198 1212 0.92

8 9 6e-07 6.6e-05 23.7 2.1 3 23 1397 1417 1395 1417 0.96

9 9 2.1e-07 2.2e-05 25.2 0.9 1 23 1423 1445 1423 1445 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.2e-06	0.00057	20.8	0.9	1	23	378	400	378	400	0.98
2	9	1e-05	0.0011	19.9	2.1	1	23	406	428	406	428	0.98
3	9	0.065	7.1	7.9	3.8	2	23	789	810	788	810	0.98
4	9	4.5e-08	4.9e-06	27.3	0.6	1	23	816	838	816	838	0.97
5	9	6.3e-05	0.0068	17.4	2.6	1	23	848	870	848	870	0.98
6	9	0.0022	0.24	12.5	1.9	2	23	1171	1192	1170	1192	0.97
7	9	0.032	3.5	8.9	1.0	1	14	1198	1211	1198	1212	0.92
8	9	6e-07	6.6e-05	23.7	2.1	3	23	1397	1417	1395	1417	0.96
9	9	2.1e-07	2.2e-05	25.2	0.9	1	23	1423	1445	1423	1445	0.98

Sequence Information

Coding Sequence: ATGCAGCTCATGAGATGGAGCATCACGCGGCGTCTCGAATCGCGCGGCATCAAGCAAGGCACCTGCAGACAGTCCAGGCTATCGTGTCCTCGTTCCTCCGGAGAAGAAAATGACTTTACATCGGACGGTGAAGAGAGTGGTGGTCCGGGAGGCGGAGGAGACGAAGCCGTGGATCTCACGGCAGCCCGGTCTCATCAGGGCGATGAAGACGATAAGGACCAGGATGACGCTTTGGAGGAGGACGAAGAGGAAGGTGTGGACGAACAGGATGAGCAGGAAGACGACGAAGAAGGTTCCCGTAAACAGATGCGTCACCGTCAGGACGCGGAGAACAACAACAATTTCGTGGAGAGTGGCGCGGCTGCCGGCCTATTTCCACCAGCTGGGACTAGTCATGTCACCTTGGAGGCCCTTCAGAACACAAAAGTGGCGGTCGCTCAGTTTGCGGCGACAGCCCTTGCCGGTGGCGCTGACAGCGAGGCGGCTCTGCAAGATTTGGCGCTGCTGCAAAGCACCTTGTATACCCTGCAGCATCAGCAGGTGTTCCAGTTACAGTTAATCAGCCAACTTCAGCAACAACTGTCCATCACGCACAGCCAGTCGGCGCAGCAACAGACCGTGGGTGAGCCGTCGGATAACAAAGAGGTGTCTCCGTCTCCCATTATCCAACCGAAACCTATATCGAGTTTAACGTCGCCTCCGTCGTCGCGTCCGCCGAGCCATCAGCAAGCTTCGCCGGCTCCGATGACGCCGAATCTGTCCCAGGAACGGCCGACTCCGACCAGCAGCGCTTCTCCTTTGAATCTTCCGTTACCCGCGTCGAACGCGACGGGCACCACAGCTACCACGAGTAGTAGCCAAGTGCCGTTGTCTCATCAGATGCCACCCCTCTGTTCCATCAGTTCTTCCCTTGCCTCGTCGATAATAACCAATACCGATCCGCCGCCGTTGCACGAGCCGAACACACTGGAGATGCTGCAGAAGAGAGCACAGGAAGTACTGGACAACGCCAGTCAGGGTCTGCTGGCCAACAACCTGGCCGACGAACTCGCGTTCAGGGGTGGGAAAGGTTCCCGTCCATCCCCGTACGATTCAAAGTCTGGTAGTGGTCGCGGGGAGCCGTTCTTCAAGCATCGATGCCGCTACTGCGGCAAGGTGTTCGGCAGCGATTCAGCGCTTCAGATCCACATACGATCGCACACAGGTGAGCGACCCTTTAAATGCAACGTCTGCGGCAGCCGCTTCACCACGAAAGGGAACTTGAAGGTCCACTTCCAAAGGCATACGGCCAAGTTTCCACATGTTAAGATGAACCCGAATCCCGTTCCGGAACACCTGGACAAGTACCACCCACCCCTGCTACAGCAGATTGCCTCCGGTCAGAGACCAATGCCGTCCCCGCCGCCGCCACCACCTTCTCATCATCCCTCTTTTCACCCGGCGGCGGCACATGGTTTTTTACCTCCCCAGCCGCCCCTACCACTCAGTTTAGCCCTGCCCGGTATGCCACCCTTGTACAGATCACCGGTCGTCGCTCATCGAGACGATCAGGACGTACCGGAGAACCTGAGTAAACCCATAACCACTGCCCCCACCACGTCTCCACATTCCCCCGCGATTGTGTCGAACTCTCGTCATTCCTTTCACGACAATCACCAACAACAAAAGCAGCAGCTCGAGCAAAGGGACGAGATCAAGATCGAGCAGCGATCGCCTATGCAAGAGCAGTACCAGCAACGGCCCACGAGTCGGGAAACTGCCGAGAGGATAACCCCGAAGAAAGAGCCGGAGGAAGCCGAGGAGCCGACGGAAGAGGAAAGCGAGGACTTCGAGGAAACGTCCAGACGGTACTTGAACTCGCCCCAATCCTCCGTCAATCCGCTCTCACAGCCGCAAACGTACGAGGACTGCAGCATGGACAGCAAGATCAGCGGACGACTAGAAGCGGACGGTGACATGGAGGTCGACGAGGAGATCGAAGAACAACCCGAGAATCTGTCCGGTCGAGGAGCCATAAACCGTTTACCGCAGCAGATCGTTGCTTACCCTGGTGCATCGCCTGCCAGCAGTAGCGCAAGTAGCGGAAGCCTTCAGACGTCGTTCGCGGGTATCCTCTTTCCCGGACCACCGGCCCATCATCAAATACCCCATCACGCTGCGGCTACGGCTATAAATACACCGATAGTTTCAACCAGCGAGATGATCGATCCGGCCAAGGATCCAGCCATCTACTCGAGCCTTTTACCACGGCCGGGCAGCAATGACAACTCCTGGGAAAGTTTGATCGAGATAACGAAGACCTCGGAGACGTCGAAGTTGCAGCAGTTGGTCGACAATATCGAGCATAAACTGACCGATCCGAATCAATGCGTGATCTGCCACAGAGTGTTATCGTGCAAAAGCGCGCTGCAGATGCACTACAGGACCCATACCGGGGAGCGACCGTTCAAATGTAAAATTTGCGGTCGCGCGTTCACCACCAAGGGCAATCTGAAAACGCACATGGGCGTGCACAGAGCGAAACCACCTCTCAGAGTGCTACACCAATGTCCGGTCTGTCACAAGAAATTCACGAACGCGCTGGTCCTGCAACAGCACATACGTTTGCACACAGGCGAACCGACGGAACTCAGTCCGGAACAGATCCAGGCTGGCGAGGTGAACGAGTTCCCACCGGGTTATCCTCACCACCCATTGGCATCGTTTCTCCCGCAAGGCTTTCCACCGATCCACCCCGCAGGAGCAGGCTTTCCCTTGGGTTTTCCGCCGAAATTGGAGCTAAAAGATGAGGCTCAACAGCAACACCATCACCATCACCatcagcagcaacagcaacagcagcagcagcagcagcagcagaggTATGTGGAGGATCACAGCGAGGAGGCGGACGACCAGGATGACGAGGAAGAGGACCGCAGAGAAGACGACGAGCGGTGCGACGTGAATCGCGACGGTCGATGCGAGCCAGAGGATGAGCAGGATCGCGAGAGCGAGGAGAACGAGCACAAAGATCTCGGCTTGCCGAGTTTCTCGACGTCCCTAGCAGCTCTCGAGAACCAAGTGCGGACCATCACCACGATAGCCACCTCGAGCGCAGGGAACTTGGCCAGATCACCACCTTTTCACCGGTACAACGGCAGCGAGAAAAGCAATAGCCCGCCGAACACCGGTGCACCCTTAGACTTGACACCTCGTGCATCCTCCACGCCAGCCACAGTGGCGTCGATACCaacgccgccaccgccgcccccGCCTCAGACAGCGGCACACCATCCACATCCCTTCGGCATGTTCGCAGGCCTCCTGCAGGCGGTCTCGTCGTCGCCGTCCACCAGCAGCATCGGATCCTCGAGCATAAATAGTGTCAGTTCGATGAACGCCGTCACTCCGGGATCCGGCGCCGCTGGACCTCTCGCCTCGCTTACCACGTCAGCCGTTCTGGCTGCCACATCCACCTACAACCCGCTCGGCCTAGCTGTCGGAGGGCCAGCAGTGCGTGGAAACACCACATGTAATATCTGCTACAAGACATTTGCGTGCAACTCCGCGCTGGAGATTCATTACCGGAGCCACACGAAGGAGCGACCTTTCAAATGCACCATATGCGACCGAGGCTTTTCCACGAAGAACGACGGTTCCGGTCAGCAAACGTGCAACTGTACATCTCAACCGTTGCCCGATAATAGTTCGATCACTTCACCCGATTCCCAATATCAAACATCGTGTGCCAGTAATCGAGAGAAACCAAAACGCAGGCGGCGACGGCCTGAGGAGCGGAAGAACCGGGGGCGGAGAGGAGCCGGAGGGGGGCGGGGGCTGACACCTGTCTATCCTGCCATCCGCCTACCCCCGCTGATGTCACCCGCCCTCGGACTTCTACCCTCGGCCCACAGCCTCCTGGGGAACATGAAGCAGCACATGCTGACACACAAGATACGCGACATGCCGCCCCATCTGTTCAGCGACTCGAAGCAGCAGATGCAGCAGCAGTCTCAGGAGCACGAGACCTCGAGGAGTCCGATGTGCGCCGAagacaccagtttgccaccgccTCCGCCGCCCCCGCCGCCTCCTCCGCCGATACCACCGACATCGATAGAGCAGACGATTTCAGTGAAGAGATCTCCGTCCGAAGGGGACCTGCCAGCACCAAAGAGACCAGCCAGCGTGCCGAGCAAACACTTGTGCCAGATTTGCAATAAGAATTTCTCCTCATCTTCGGCGCTCCAGATCCATATGAGAACTCACACCGGCGACAAACCGTTCCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGCAATCTGAAGGTGCACATGGGCACGCATATGTGGACCAACGGAGCCTCCCGGCGAGGCCGTCGAATGTCGCTGGACCTACCTCCCCTACCCATCACACCCAAGGACTCGGAATTTCTTCAGCGACGACCGGATCTCTTCTATCCGTATTTACCCGCGCCGTTCCTTAACGGCGTACAGCAGAAACTGAACGAGATCTCGGTGATCCAAAGTAACAACGGGCTACCGGGTCATTCGGTGGCTACCGGAAAGTACGCGGGCTTGTTCGGCTCGGTGTATGCAGCCGGAGCTGGGTTTCCGTTGGACAAACAGCCTATGGCGCCGACGAGTAATGGGCCGCTGGTCGATGGTAAATCCTCGATTCCATCCGGTTCCATGCTGTTTCAAACATCCTCACCGTCCCACTCTCCGGGCACGCCGTCGTCAAACGGTAGCAATCAGAACTCGACGGGTGTGCCCTCGTGGACAGGTGACGGACTTCAGCATCACTTCGACAGGGAGCCTTCGAATCGGTCCGAGAGCAACTCGACACCGCCGTCAGCCCGACTTCCACCACCTCCGGCTGCCAGGGGCGAAGGTTTAGCCACGTGA
Protein Sequence: MQLMRWSITRRLESRGIKQGTCRQSRLSCPRSSGEENDFTSDGEESGGPGGGGDEAVDLTAARSHQGDEDDKDQDDALEEDEEEGVDEQDEQEDDEEGSRKQMRHRQDAENNNNFVESGAAAGLFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHSQSAQQQTVGEPSDNKEVSPSPIIQPKPISSLTSPPSSRPPSHQQASPAPMTPNLSQERPTPTSSASPLNLPLPASNATGTTATTSSSQVPLSHQMPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRPSPYDSKSGSGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPSHHPSFHPAAAHGFLPPQPPLPLSLALPGMPPLYRSPVVAHRDDQDVPENLSKPITTAPTTSPHSPAIVSNSRHSFHDNHQQQKQQLEQRDEIKIEQRSPMQEQYQQRPTSRETAERITPKKEPEEAEEPTEEESEDFEETSRRYLNSPQSSVNPLSQPQTYEDCSMDSKISGRLEADGDMEVDEEIEEQPENLSGRGAINRLPQQIVAYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPHHAAATAINTPIVSTSEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTELSPEQIQAGEVNEFPPGYPHHPLASFLPQGFPPIHPAGAGFPLGFPPKLELKDEAQQQHHHHHHQQQQQQQQQQQQQRYVEDHSEEADDQDDEEEDRREDDERCDVNRDGRCEPEDEQDRESEENEHKDLGLPSFSTSLAALENQVRTITTIATSSAGNLARSPPFHRYNGSEKSNSPPNTGAPLDLTPRASSTPATVASIPTPPPPPPPQTAAHHPHPFGMFAGLLQAVSSSPSTSSIGSSSINSVSSMNAVTPGSGAAGPLASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKNDGSGQQTCNCTSQPLPDNSSITSPDSQYQTSCASNREKPKRRRRRPEERKNRGRRGAGGGRGLTPVYPAIRLPPLMSPALGLLPSAHSLLGNMKQHMLTHKIRDMPPHLFSDSKQQMQQQSQEHETSRSPMCAEDTSLPPPPPPPPPPPPIPPTSIEQTISVKRSPSEGDLPAPKRPASVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPGHSVATGKYAGLFGSVYAAGAGFPLDKQPMAPTSNGPLVDGKSSIPSGSMLFQTSSPSHSPGTPSSNGSNQNSTGVPSWTGDGLQHHFDREPSNRSESNSTPPSARLPPPPAARGEGLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118182;
90% Identity: iTF_00676196;
80% Identity: -