Basic Information

Insect: Lasioglossum malachurum
Gene Symbol: salm
Assembly: GCA_028455605.1
Location: CM052315.1:20884383-20898780[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.1e-06 0.00038 20.8 0.9 1 23 378 400 378 400 0.98

2 9 1e-05 0.00075 19.9 2.1 1 23 406 428 406 428 0.98

3 9 0.064 4.7 7.9 3.8 2 23 789 810 788 810 0.98

4 9 4.4e-08 3.3e-06 27.3 0.6 1 23 816 838 816 838 0.97

5 9 6.1e-05 0.0046 17.4 2.6 1 23 848 870 848 870 0.98

6 9 0.0021 0.16 12.5 1.9 2 23 1169 1190 1168 1190 0.97

7 9 0.032 2.3 8.9 1.0 1 14 1196 1209 1196 1210 0.92

8 9 5.9e-07 4.4e-05 23.7 2.1 3 23 1396 1416 1394 1416 0.96

9 9 2e-07 1.5e-05 25.2 0.9 1 23 1422 1444 1422 1444 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.1e-06	0.00038	20.8	0.9	1	23	378	400	378	400	0.98
2	9	1e-05	0.00075	19.9	2.1	1	23	406	428	406	428	0.98
3	9	0.064	4.7	7.9	3.8	2	23	789	810	788	810	0.98
4	9	4.4e-08	3.3e-06	27.3	0.6	1	23	816	838	816	838	0.97
5	9	6.1e-05	0.0046	17.4	2.6	1	23	848	870	848	870	0.98
6	9	0.0021	0.16	12.5	1.9	2	23	1169	1190	1168	1190	0.97
7	9	0.032	2.3	8.9	1.0	1	14	1196	1209	1196	1210	0.92
8	9	5.9e-07	4.4e-05	23.7	2.1	3	23	1396	1416	1394	1416	0.96
9	9	2e-07	1.5e-05	25.2	0.9	1	23	1422	1444	1422	1444	0.98

Sequence Information

Coding Sequence: ATGCAGCTCATGAGATGGAGCATCACGAGGCGTCTCGAATCGCGCGGCATCAAGCAAGGCACCTGCAGACAGTCCAGGCTATCGTGTCCTCGTTCCTCCGGAGAAGAAAATGACTTTACATCGGACGGTGAAGAGAGTGGTGGTCCGGGAGGCGGAGGGGACGAAGCCGTGGATCTCACAGCAGCCCGATCTCATCAGGGCGATGAAGACGATAAGGACCAGGATGACGCTTTGGAGGAGGACGAAGAGGAAGGTGTGGACGAACAGGATGACCAGGAAGACGACGAAGAAGGTTCCCGCAAACAAATGCGTCACCGTCAGGACGCGGAGAACAACAACAATTTCGTGGAGAGTGGCGCGGCTGCTGGCCTATTTCCACCAGCTGGGACTAGTCATGTCACCTTGGAGGCCCTTCAGAACACAAAAGTGGCGGTCGCTCAGTTTGCGGCGACAGCCCTTGCCGGTGGCGCGGACAGCGAGGCGGCTCTGCAAGATTTGGCGCTGTTGCAAAGCACCTTGTATACCCTGCAGCATCAGCAGGTGTTCCAGTTACAGTTAATCAGCCAACTTCAGCAACAACTGTCCATCACGCACAGCCAGTCGGCGCAGCAACAGACCGTGGGTGAGCCGTCGGATAACAAAGAGGTGTCTCCGTCTCCCATTATCCAACCGAAACCTATATCGAGTTTAACGTCGCCTCCGTCGTCGCGTCCGCCGAGTCATCAGCAAGCTTCGCCGGCTCCGATGACGCCGAATCTGTCCCAGGAACGGCCGACTCCGACCAGCAGCGCTTCTCCTCTGAATCTTCCGTTACCCGCGTCGAACGCGACGGGCACCACAGCTACCACGAGTAGTAGCCAAGTGCCGTTGTCTCATCAGATGCCACCCCTCTGTTCCATCAGTTCTTCCCTTGCCTCGTCGATAATAACCAATACCGATCCGCCGCCGTTGCACGAGCCGAACACTCTGGAGATGCTGCAGAAGAGAGCACAGGAAGTACTGGACAACGCCAGTCAGGGTCTGCTGGCCAACAACCTGGCCGACGAACTCGCGTTCAGGGGTGGAAAAGGTTCCCGTCCATCCCCGTACGATTCAAAGTCTGGTAGTGGTCGCGGGGAGCCGTTCTTCAAGCATCGATGCCGCTActgcggcaaggtgttcggcagcgattcagcgcttcagatccacatacgatcgcacacaggtgagcgaccctttaaatgcaacgtctgcggcagccgcttcaccacgaaagggaacttgaaggtccacttccaaaggcatacggccaagTTTCCACATGTTAAGATGAACCCGAATCCCGTTCCGGAACACCTGGACAAGTACCACCCACCCCTGCTACAGCAGATTGCCTCCGGTCAGAGACCAATGCCGTCCCCGCCGCCGCCGCCACCTTCTCATCATCCCTCTTTTCACCCGGCGGCGGCACATGGTTTTTTACCTCCCCAGCCGCCCCTACCACTCAGTTTAGCCCTGCCCGGTATGCCACCCTTGTACAGATCACCGGTCGTCGCTCATCGAGACGATCAGGACGTACCGGAGAACCTGAGTAAACCCATAACCACTGCCCCCACCACGTCTCCACATTCCCCCGCGATTGTGTCGAACTCTCGTCATTCCTTTCACGACAATCACCAACAACAAAAGCAGCAGCTCGAGCAGAGGGACGAGATCAAGATCGAGCAGCGATCGCCTATGCAAGAGCAGTACCAGCAACGGCCTACGAGTCGGGAAGCTGCCGAAAGGATAACCCCGAAGAAAGAGCCGGAGGAAGCCGAGGAGCCGACGGAAGAGGAAAGCGAGGACTTCGAAGAAACGTCCAGACGGTACTTGAACTCGCCCCAATCCTCCGTCAATCCGCTCTCACAGCCGCAAACGTACGAGGACTGCAGCATGGACAGCAAGATCAGCGGACGACTAGAAGCGGACGGTGACATGGAGGTCGACGAAGAGATCGAAGAACAACCCGAAAATCTGTCCGGTCGAGGAGCCATAAACCGTTTACCGCAGCAGATCGTTGCTTACCCTGGTGCATCGCCTGCCAGCAGTAGCGCAAGCAGCGGAAGCCTTCAGACGTCGTTCGCGGGTATCCTCTTTCCCGGACCACCGGCCCATCATCAAATACCCCATCACGCTGCGGCTACGGCTATAAATACACCGATAGTTTCAACCAGCGAGATGATCGATCCGGCCAAGGATCCAGCCATCTACTCGAGCCTCTTACCGCGGCCGGGCAGCAATGACAACTCCTGGGAAAGTTTGATCGAGATAACGAAGACCTCGGAGACGTCGAAGTTGCAGCAGTTGGTCGACAATATCGAGCATAAGCTGACCGATCCGAATCAAtgcgtgatctgccacagagtgttatcgtgcaaaagcgcgctgcagatgcactacaggacccacaccggggaacgaccgttcaaatgtaaaatttgcggtcgcgcgttcaccaccaagggcaatctgaaaacgcacatgggcgtgcacagagcgaAACCACCTCTTAGAGTACTACACCAATGTCCGGTCTGTCACAAGAAATTCACGAACGCGCTGGTCCTGCAACAGCACATACGTTTGCACACAGGCGAACCGACGGAACTCAGTCCGGAACAGATCCAGGCTGGCGAAGTGAACGAGTTCCCACCGGGTTATCCTCACCACCCATTGGCGTCGTTTCTCCCGCAAGGCTTTCCACCGATCCACCCCGCAGGAGCAGGCTTTCCCTTAGGTTTTCCGCCGAAATTGGAACTGAAAGATGAGGCTCAACAGCAAcaccatcaccatcaccatcagcagcaacagcaacagcaacagcagcagcagaggtatgcggaggatcacagcgaggaggcggatgaccAGGATGACGAGGAAGAGGACCGTAGAGAAGACGACGAGCGGTGCGACGTGAATCGCGACGGTCGATGCGAGCCAGAGGATGAGCAGGATCACGAGAGCGAGGAGAACGAGCACAAAGATCTCGGCTTGCCGAGTTTCTCGACGTCCCTAGCAGCTCTCGAGAACCAAGTGCGAACCATCACAACGATAGCCACCTCGAGCGCAGGGAACTTGGCTAGATCACCACCTTTTCACCGGTACAACGGCAGCGAGAAAAGCAATAGCCCGCCGAACACCGGTGCACCCTTAGACTTGACACCTCGTGCATCCTCCACGCCAGCCACAGTGGCGTCGATACCAACGCCGCCACCGCCGCCCCCGCCTCAGACAGCGGCACACCATCCACATCCCTTCGGCATGTTCGCAGGCCTCCTGCAGGCGGTCTCGTCGTCGCCGTCCACCAGCAGCATCGGATCCTCGAGCATAAATAGTGTCAGTTCGATGAACGCCGTCACTCCGGGATCCGGCGCCGCTGGACCTCTGGCCTCGCTTACCACGTCAGCCGTTTTGGCTGCCACATCCACCTACAACCCGCTCGGCCTAGCTGTCGGAGGGCCAGCAGtgcgtggaaacaccacatgtaatatctgctacaagacatttgcgtgcaactccgcgctggagattcattaccggagccacacgaaggagcgacctttcaaatgcaccatatgcgaccgaggcttttccacgaagAACGACGGTTCCGGTCAGCAAACGTGCAACTGTACATCTCAACCGTTGCCCGATAATAGTTCGATCACTTCACCCGATTCCCAATATCAAACATCGTGTGCCAGTAATCGAGAGAAACCAAAACGCAGGCGGCGACGGCCTGAGGAGCGGAAGAACCGGGGGCGGAGAGGAGCCGGAGGGGGGCGGGGGCTGACACCTGTCTATCCTGCCATCCGCCTACCCCCGCTGATGTCACCCGCCCTCGGACTTCTACCCTCGGCCCACAGCCTCCTGGGGAACATGAAGCAGCACATGCTAACACACAAGATACGCGACATGCCGCCTCATCTGTTCAGCGACTCGAAGCAGCAGATGCAGCAGCAGCAGTCTCAGGAGCACGAGACCTCGAGGAGTCCGATGTGCGCCGAAGACACGAGTCTGCCACCGCCTCCGCCGCCCCCGCCGCCTCCCCCACCGATACCACCGACATCGATAGAGCAGACGATTTCAGTGAAGAGATCTCCGTCCGAAGGGGACCTGCCAGCACCAAAGAGACCAGCTAgcgtgccgagcaaacacttgtgccagatttgcaataagaatttctcctcatcttcggcgctccagatccatatgagaactcacaccggcgacaaaccgttccgatgcaccgtctgccagaaggccttcaccaccaagggcaatctgaagGTGCACATGGGCACGCATATGTGGACCAACGGAGCCTCGCGGCGAGGCCGCCGAATGTCGCTGGACCTACCTCCCCTACCCATCACACCCAAGGACTCGGAATTCCTTCAGCGACGACCGGATCTCTTCTATCCGTATTTACCCGCGCCGTTCCTTAACGGCGTACAGCAGAAACTGAACGAGATCTCGGTGATCCAAAGTAACAACGGGCTACCGGGTCATTCGGTGGCTACCGGAAAGTACGCGGGCTTGTTCGGCTCGGTGTATGCAGCCGGAGCTGGGTTTCCGTTGGACAAACAGCCTATGGCGCCGACGAGTAATGGGCCGCTGGTCGATGGTAAATCCTCGATTCCATCCGGTTCCATGCTGTTTCAAACATCCTCACCGTCGCACTCTCCGGGCACGCCGTCGTCAAACGGTAGCAATCAGAACTCGACGGGTGTGCCCTCGTGGACAGGTGACGGACTTCAGCATCACTTCGACAGGGAGCCCTCGAATCGGTCCGAGAGCAATTCGACACCGCCGTCAGCCCGACTTCCACCACCTCCGGCAGCCAGGGGCGAAGGTTTAGCCACGTGA
Protein Sequence: MQLMRWSITRRLESRGIKQGTCRQSRLSCPRSSGEENDFTSDGEESGGPGGGGDEAVDLTAARSHQGDEDDKDQDDALEEDEEEGVDEQDDQEDDEEGSRKQMRHRQDAENNNNFVESGAAAGLFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHSQSAQQQTVGEPSDNKEVSPSPIIQPKPISSLTSPPSSRPPSHQQASPAPMTPNLSQERPTPTSSASPLNLPLPASNATGTTATTSSSQVPLSHQMPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRPSPYDSKSGSGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPSHHPSFHPAAAHGFLPPQPPLPLSLALPGMPPLYRSPVVAHRDDQDVPENLSKPITTAPTTSPHSPAIVSNSRHSFHDNHQQQKQQLEQRDEIKIEQRSPMQEQYQQRPTSREAAERITPKKEPEEAEEPTEEESEDFEETSRRYLNSPQSSVNPLSQPQTYEDCSMDSKISGRLEADGDMEVDEEIEEQPENLSGRGAINRLPQQIVAYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPHHAAATAINTPIVSTSEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTELSPEQIQAGEVNEFPPGYPHHPLASFLPQGFPPIHPAGAGFPLGFPPKLELKDEAQQQHHHHHHQQQQQQQQQQQRYAEDHSEEADDQDDEEEDRREDDERCDVNRDGRCEPEDEQDHESEENEHKDLGLPSFSTSLAALENQVRTITTIATSSAGNLARSPPFHRYNGSEKSNSPPNTGAPLDLTPRASSTPATVASIPTPPPPPPPQTAAHHPHPFGMFAGLLQAVSSSPSTSSIGSSSINSVSSMNAVTPGSGAAGPLASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKNDGSGQQTCNCTSQPLPDNSSITSPDSQYQTSCASNREKPKRRRRRPEERKNRGRRGAGGGRGLTPVYPAIRLPPLMSPALGLLPSAHSLLGNMKQHMLTHKIRDMPPHLFSDSKQQMQQQQSQEHETSRSPMCAEDTSLPPPPPPPPPPPPIPPTSIEQTISVKRSPSEGDLPAPKRPASVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPGHSVATGKYAGLFGSVYAAGAGFPLDKQPMAPTSNGPLVDGKSSIPSGSMLFQTSSPSHSPGTPSSNGSNQNSTGVPSWTGDGLQHHFDREPSNRSESNSTPPSARLPPPPAARGEGLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118182;
90% Identity: iTF_00676196;
80% Identity: -