Basic Information

Insect: Endotricha flammealis
Gene Symbol: -
Assembly: GCA_905163395.1
Location: LR990879.1:7796227-7800950[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.24 7.3e+02 1.3 0.3 21 40 40 60 33 67 0.78

2 8 0.08 2.5e+02 2.8 0.1 21 49 363 391 352 394 0.81

3 8 0.00013 0.39 11.8 0.3 21 46 391 416 387 422 0.88

4 8 0.012 37 5.4 0.1 21 45 419 443 415 446 0.90

5 8 6.6e-05 0.2 12.7 0.0 21 52 447 478 443 479 0.86

6 8 0.039 1.2e+02 3.8 0.0 21 45 475 499 471 503 0.89

7 8 9.4e-05 0.29 12.2 0.2 21 46 503 528 498 534 0.87

8 8 0.18 5.4e+02 1.7 0.0 21 46 531 556 527 561 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.24	7.3e+02	1.3	0.3	21	40	40	60	33	67	0.78
2	8	0.08	2.5e+02	2.8	0.1	21	49	363	391	352	394	0.81
3	8	0.00013	0.39	11.8	0.3	21	46	391	416	387	422	0.88
4	8	0.012	37	5.4	0.1	21	45	419	443	415	446	0.90
5	8	6.6e-05	0.2	12.7	0.0	21	52	447	478	443	479	0.86
6	8	0.039	1.2e+02	3.8	0.0	21	45	475	499	471	503	0.89
7	8	9.4e-05	0.29	12.2	0.2	21	46	503	528	498	534	0.87
8	8	0.18	5.4e+02	1.7	0.0	21	46	531	556	527	561	0.87

Sequence Information

Coding Sequence: ATGTCTTTTCTAGCTGTATGTAGGTTATGCTTAACTGTTAACACCAAAATGCATTTTATTTGCAACACACCATTACAGGAAGTTTATGAAAAACTGACGAGATGTTCTCTATACACATCGCAGAAACCAGTAGTGGCATGTTACATATGCTTAGCGCACCTCCAGAGTGCTCGCACACTGATGTTGAGGGCTTTGAAAGCTGAGGGAGTGCTCACAGAGATCCTGAATACAGAACCATTGCTGACAGAAAAATCAATAACAATTATTGACAGGGCGTCATATAAACTAAACAGCCCATTGACTTGTTCGCAAATAGAGCATATTGTTGTGGGTTCAACTCCTGTGAAAATTGAGGTGAAAGAAGAACCGACATATTTGGTGATTGAAAAGAAAAATATAGACATAGAACAAGACTCACCTCTCCAAGACCAAGAAACACTAGAATCAGACCAGGACGAAACACAACCTACTGTGTCCGACTCCGAAGATGATCTACCACTCACCACAGTAAAAACGAAGGAAAAAATTAAAGGGAGACCTCATTTGAAAGTTACGAAAAATGATTTAGTCGTCAAGCCAGTGGAAGAACAAAACGTCCCATCTACACAGAGGTTTTGTGAAGATTGCAATGTACAATTTAAAACTTTGGAGGCGTGGAAATGTCATATACTTACTTCACCTAAACATACTATAGACAGTGGTGGCAGAACAATGAAACTAATTCTGCGCAAGTACAATCCGCCGCGGGGACTCGCAGCTAAATATGGTGAACCTCCAATGAAGAAAACTGAAGTAACACACACGGATATAAATGAAAAAACAAATTTACAAATCAACGCAAATATTCAACCAAGATGTCACGAAACAGAAATAAATAACGCAGTTATTATTGAAACGCCAAAACCAAAAAATATTAACAAAACTACGTGTAACCAAACCGACATTGAATATATTTGCGACGATTGCGGCTCCAAATTCGATGATAAATGTTTACTTACTAAACATATAGAACATCATAATTTAATGAAATCTAAAATTCAATTGAGTTATAACAAAGGTAGTTTAAACGCGTCTTCATTGACAAGAAAAGATAAATCAAATATGTGCGAAATATGTAACAAGAGATTTACTAGAAGTAGTCATTTAAAAACCCATCTAAGAATACACTCAGGAGAAAAGCCTTACAAATGTGAGATATGTAAGAAGAGATTTATTAAAAGTAGTAATTTAAAAAGACATCTAAGAATACATTCTGGAGAAAGGCCTTATAAATGTGAGATATGTAATAAAAATTTTAATCAAAATAGTGATTTAACAAAACATTTAAGAACACACTCAGGAGAAAAGCCTTACAAATGTGAGATATGTAATAAGGGATTTAATCAAAGTGGTAATTTAAAATCTCATCTAAGAATACACTCCGGGGAAAAGCCTTACAAATGTGAGATATGTAAGAAGAGATTTAATGAAAGTGGTCATTTAAAAACCCATCTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTATTAAAAGTAGTAATTTAAAAAGACATCTAAGAATACATTCTGGAGAAAGGCCTTATAAATGTGAGTTAAGTAATAAGAGATTTAATCAAAGTGGTTCTTTAAAAAAACATTTAAGAATGCACTCTGGAGAAAAGGCTTATAAATGTTAG
Protein Sequence: MSFLAVCRLCLTVNTKMHFICNTPLQEVYEKLTRCSLYTSQKPVVACYICLAHLQSARTLMLRALKAEGVLTEILNTEPLLTEKSITIIDRASYKLNSPLTCSQIEHIVVGSTPVKIEVKEEPTYLVIEKKNIDIEQDSPLQDQETLESDQDETQPTVSDSEDDLPLTTVKTKEKIKGRPHLKVTKNDLVVKPVEEQNVPSTQRFCEDCNVQFKTLEAWKCHILTSPKHTIDSGGRTMKLILRKYNPPRGLAAKYGEPPMKKTEVTHTDINEKTNLQINANIQPRCHETEINNAVIIETPKPKNINKTTCNQTDIEYICDDCGSKFDDKCLLTKHIEHHNLMKSKIQLSYNKGSLNASSLTRKDKSNMCEICNKRFTRSSHLKTHLRIHSGEKPYKCEICKKRFIKSSNLKRHLRIHSGERPYKCEICNKNFNQNSDLTKHLRTHSGEKPYKCEICNKGFNQSGNLKSHLRIHSGEKPYKCEICKKRFNESGHLKTHLRTHSGEKPYKCEICKKRFIKSSNLKRHLRIHSGERPYKCELSNKRFNQSGSLKKHLRMHSGEKAYKC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00648373; iTF_00648355; iTF_00648770; iTF_00648420; iTF_00648374; iTF_00648765; iTF_00648359; iTF_00648353; iTF_00648772; iTF_00648773; iTF_00648361; iTF_00648364; iTF_00648365; iTF_00648766; iTF_00648351; iTF_00648767;
90% Identity: iTF_00648365;
80% Identity: iTF_00648373;