Efla017230.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990879.1:7611555-7623231[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.28 8.6e+02 1.1 0.3 21 40 40 60 33 67 0.78 2 10 0.59 1.8e+03 0.0 0.0 22 49 364 391 357 394 0.80 3 10 0.024 73 4.5 0.1 21 46 391 416 387 422 0.85 4 10 0.0033 10 7.2 0.1 21 49 419 447 415 450 0.84 5 10 0.0023 7.1 7.7 0.0 21 46 447 472 443 478 0.86 6 10 0.00035 1.1 10.3 0.1 21 52 475 506 471 507 0.90 7 10 0.42 1.3e+03 0.5 0.0 11 45 522 557 519 560 0.79 8 10 5.8e-06 0.018 16.0 0.0 21 51 561 591 557 592 0.86 9 10 0.0012 3.6 8.7 0.1 21 51 589 619 585 620 0.86 10 10 0.016 50 5.0 0.4 21 47 617 643 613 648 0.87
Sequence Information
- Coding Sequence
- ATGTCTTTTCTAGCTGTATGTAGATTATGCTTAACTGTAAACACAAAAATGCATTTTATTTGCAACACACCATTACAGGAAGTTTATGAAAAACTGACGAGATGCTCTCTATACACATCGCAGAAACCAGTAGTGGCATGTTACATATGCTTAGCGCACCTCCAGAGTGCTCGTACACTGATGTTGAGGGCTTTGAAAGCTGAGGGAGTGCTCACAGAGATCCTGAATACAGAACCATTGCTGACAGAAAAATCAATAACAATTATTGACAGGGCGTCATATAAACTAAACAGCCCATTGACTTGTTCGCAAATAGAGCATATTGTTGTGGGTTCAACTCCTGTGAAAACTGAGGTGAAAGAAGAACCGACATATTTGGAGATTGAAAAGAAAAATATAGACATAGAACAAGACTCACATCTCCAAGACCAAGAAACACTAGAATCAGACCAGGACGAAACACAACCTACTGTGTCCGACTTCAAAGATGATCTACCATTCACCACAGTAAAAATAAAGGTAAAAATTAAAGGGAGACCTCATTTGAAAGTTACGAAAAATGATTTAGTGGTCAAGCCAGTGGAAGAACAAAACGTCCCATCTACACAGAGGTTTTGTGAAGATTGCAATATACAATTTAAAACTTTGGAGGCGTGGAAATGTCATATACTTACTTCACCTAAACATACTATAGACAGTGGTGGCAGAACAATGAAACTAATTCTGCGCAAGTACAATCCGCCGCGGGGACTCGCAGCTAAATATGGTGAACCTCCAATGAAGAAAACTGAAGTAACACACACGGATATAAATGAAAAAACAAATTTACAAATCAACGCAAATATTCAACCAAGACGACAGGAAACAGAAATAAATAACGCAGTTATTATTGAAACGCCAAAACCAAAAAATATTAACAAAACTACGTGTAACCAAACCGACATTGAATATATTTGCGACGATTGCGGCTCCAAATTCGGTGATAAATGTTTACTTACTAAACATATAGAACATCATAATTTAATGAAATCTAAAATTCAGTTGAGTTATAACAAAGGTATTTTAAACGCGTCTTCATTGACAAGAAAAGATAAATCAAATATGTGCGAATTATGTAACAAGGGATTTACTAGAAGTAGTAGTTTAAAAACTCATCTAACAATACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGTTTTAATCGAAATGTTAGTTTAACAAGACATTTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGTTTTAATCGAAATGTTAGTTTAAAAAGACATTTAAGAATACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTAATGAAAGTGGTAATTTAAAAACCCATCTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTAATGAAAGTGGTAATTTAAAAACCCATCTAAGAATACACTCAGTAGAAAAGCCTTATAATTATAAATGTGAGATATATAATAAGGGATTTACTACAAGTGGTACTTTAAAAATCCATTTAAGAACACACTCAGGAGAAAAGCTTTACAAATGTGAGATATGTAAGAAAAGATTTTATGGAAGTCAACATTTAAAAATCCATCTAAGAGTACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAATAAGGGTTTTAATCAAAGTGGTAATTTAAAAAGACATCTAAGAATGCATTCTGGAGAAAAGCCTTATCTATGTGAGATATGTAAGAAGAGATTTAATGAAAGTGGTCATTTAAAAAGACATCTAAGAATGCATTCTGGAGAAAAGCCTTATCTATGTGAGATATGTAATCAAAGATTTAGTCAAAATCATCATTTTAAAAAACATTTAAGAATGCACTCTGTAGAAAAGGCTTATTGA
- Protein Sequence
- MSFLAVCRLCLTVNTKMHFICNTPLQEVYEKLTRCSLYTSQKPVVACYICLAHLQSARTLMLRALKAEGVLTEILNTEPLLTEKSITIIDRASYKLNSPLTCSQIEHIVVGSTPVKTEVKEEPTYLEIEKKNIDIEQDSHLQDQETLESDQDETQPTVSDFKDDLPFTTVKIKVKIKGRPHLKVTKNDLVVKPVEEQNVPSTQRFCEDCNIQFKTLEAWKCHILTSPKHTIDSGGRTMKLILRKYNPPRGLAAKYGEPPMKKTEVTHTDINEKTNLQINANIQPRRQETEINNAVIIETPKPKNINKTTCNQTDIEYICDDCGSKFGDKCLLTKHIEHHNLMKSKIQLSYNKGILNASSLTRKDKSNMCELCNKGFTRSSSLKTHLTIHSGEKPYKCEICKKSFNRNVSLTRHLRTHSGEKPYKCEICKKSFNRNVSLKRHLRIHSGEKPYKCEICKKRFNESGNLKTHLRTHSGEKPYKCEICKKRFNESGNLKTHLRIHSVEKPYNYKCEIYNKGFTTSGTLKIHLRTHSGEKLYKCEICKKRFYGSQHLKIHLRVHSGEKPYKCEICNKGFNQSGNLKRHLRMHSGEKPYLCEICKKRFNESGHLKRHLRMHSGEKPYLCEICNQRFSQNHHFKKHLRMHSVEKAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00648768;
- 90% Identity
- iTF_00648359;
- 80% Identity
- iTF_00648359;