Basic Information

Insect: Endotricha flammealis
Gene Symbol: -
Assembly: GCA_905163395.1
Location: LR990879.1:8130306-8135366[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.34 1e+03 0.8 0.3 21 40 40 60 34 67 0.77

2 13 0.16 5e+02 1.8 0.0 22 52 364 394 353 395 0.82

3 13 0.022 69 4.6 0.1 21 47 391 417 387 423 0.85

4 13 0.0081 25 6.0 0.0 21 52 419 450 415 451 0.87

5 13 0.0052 16 6.6 0.2 21 46 447 472 443 478 0.86

6 13 0.083 2.6e+02 2.7 0.1 21 45 475 499 471 502 0.86

7 13 0.0016 4.8 8.3 0.1 21 46 503 528 489 534 0.82

8 13 0.0025 7.7 7.6 0.1 21 46 531 556 527 562 0.85

9 13 0.0061 19 6.4 0.0 21 52 559 590 555 592 0.86

10 13 0.00058 1.8 9.7 0.3 10 49 603 643 594 646 0.84

11 13 0.0071 22 6.2 0.5 21 45 643 667 639 670 0.90

12 13 0.0011 3.4 8.7 0.1 21 46 671 696 667 702 0.88

13 13 0.015 48 5.1 0.1 22 49 700 726 695 729 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.34	1e+03	0.8	0.3	21	40	40	60	34	67	0.77
2	13	0.16	5e+02	1.8	0.0	22	52	364	394	353	395	0.82
3	13	0.022	69	4.6	0.1	21	47	391	417	387	423	0.85
4	13	0.0081	25	6.0	0.0	21	52	419	450	415	451	0.87
5	13	0.0052	16	6.6	0.2	21	46	447	472	443	478	0.86
6	13	0.083	2.6e+02	2.7	0.1	21	45	475	499	471	502	0.86
7	13	0.0016	4.8	8.3	0.1	21	46	503	528	489	534	0.82
8	13	0.0025	7.7	7.6	0.1	21	46	531	556	527	562	0.85
9	13	0.0061	19	6.4	0.0	21	52	559	590	555	592	0.86
10	13	0.00058	1.8	9.7	0.3	10	49	603	643	594	646	0.84
11	13	0.0071	22	6.2	0.5	21	45	643	667	639	670	0.90
12	13	0.0011	3.4	8.7	0.1	21	46	671	696	667	702	0.88
13	13	0.015	48	5.1	0.1	22	49	700	726	695	729	0.84

Sequence Information

Coding Sequence: ATGTCTTTTCTAGCTGTATGTAGATTATGCTTATCTGTAAACACAAAAATGCATTTTATTTGCAACACACCATTACAGGAAGTTTATGAAAAACTGACGAGATGCTCTCTATACACATCGCAGAAACCAGTAGTGGCATGTTACATATGCTTAGCGCACCTCCAGAGTGCTCGCACACTGATGTTGAGGGCTTTGAAAGCTGAGGGAGTGCTCACAGAGATCCTGAATACAGAACCATTGCTCACAGAAAAATCAATAACAATTATTGACAGGGCGCCATATAAACTAAACAGCCCATTGACTTGTTCGCAAATAGAGCATATTGTTGTGGGTTCAACTCCTGTGAAAACTGAGGTGAAAGAAGAACCGACATATTTGGTGATTGAAAAGATAAATATAGACATAGAACAAGACTCACCTCTCCAAGACCAAGAAACAATAGAATCAGACCAGGACGAAACACAACCTACTGTGTCCGACTCCGAAGATGATCTACCACTCACCACAGTAAAAACGAAGGAAAAAATTAAAGGGAGACCTCATTTGAAAGTTACGAAAAATGATTTAGTCGTCAAGCCAGTGGAAGAACAAAACGTCCCATCTACACAGAGGTTTTGTGAAGATTGCAATATACAATTTAAAACTTTGGAGGCGTGGAAATGTCATATACTTACTTCACCTAAACATACTATAGACAGTGGTGGCAGAACAATGAAACTAATTCTGCGCAAGTACAATCCGCCGCGGGGACTCGCAGCTAAATATGGTGAACCTCCAATGAAGAAAACTGAAGTAACACACACGGATATAAATGAAAAAACAAATTTACAAATCAACGCAAATATTCAACCAAGATGTCACGAAACAGAAATAAATAACGCAGTTATTATTGAAACGCCAAAACCAAAAAATATTAACAAAACTACGTGTAACCAAACCGACATTGAATATATTTGCGACGATTGCGGCTCCAAATTCGATGATAAATGTTTACTTACTAAACATATAGAACATCATAATTTAATGAAATCTAAAATTCAATTGAGTTATAACAAAGGTATTTTAAACGCGTCTTCATTGACAAGAAAAGATAAATCAAATATGTGCGAAATATGTAACAAGGGATTTACTACAAGTAGTCATTTAAAAACCCATCTAAGAATACACTCAGGAGAAAAGCCTTACAAATGTGAGATATGTAATAAGAGATTTAATAGAAGTGGTCATTTAAAAAACCATTTAACAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAACAAGGGATTTACTCAAAGAAGTGATTTAAAAACTCATCTAAGAATACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTAATCAAAATGTTAGTTTAACAAGACATTTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAATAAGAGATTTAATGAAAGTGGTAGATTAAAAATACATTTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGTTTTAATCAAAATGTTAGTTTAACAAGACATTTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGTTTTAATCAAAATGTTAGTTTAACAAGACATTTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAATAAGGGACTTACTACAAGTAGTCATTTAAAAACTCATCTAAGAATGCATTCTGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTAATGAAAGTGGTACTTTAAAAACCCATCAAAGAATACACTCAGAAGAAAAGCCTTACAAATGTGAGATATGTAGTAAGGGACTTACTACAAGTAGTCATTTAAAAACTCATCTGAGAATACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTAATCAAAGTTGTCACTTAAAAGCCCATCTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAAAGATTTAATCAAAGTCAACATTTAAAAAAACATGTAAGAATACACTCAGGAGAAAAGGCTTATAAATGTGAGATATGTAATAAGAGATTTAATCAAAGTGGTCATTTAAAAACCCATCTCAGAATGCACTTTGGAGAAAAGCTATAA
Protein Sequence: MSFLAVCRLCLSVNTKMHFICNTPLQEVYEKLTRCSLYTSQKPVVACYICLAHLQSARTLMLRALKAEGVLTEILNTEPLLTEKSITIIDRAPYKLNSPLTCSQIEHIVVGSTPVKTEVKEEPTYLVIEKINIDIEQDSPLQDQETIESDQDETQPTVSDSEDDLPLTTVKTKEKIKGRPHLKVTKNDLVVKPVEEQNVPSTQRFCEDCNIQFKTLEAWKCHILTSPKHTIDSGGRTMKLILRKYNPPRGLAAKYGEPPMKKTEVTHTDINEKTNLQINANIQPRCHETEINNAVIIETPKPKNINKTTCNQTDIEYICDDCGSKFDDKCLLTKHIEHHNLMKSKIQLSYNKGILNASSLTRKDKSNMCEICNKGFTTSSHLKTHLRIHSGEKPYKCEICNKRFNRSGHLKNHLTTHSGEKPYKCEICNKGFTQRSDLKTHLRIHSGEKPYKCEICKKRFNQNVSLTRHLRTHSGEKPYKCEICNKRFNESGRLKIHLRTHSGEKPYKCEICKKSFNQNVSLTRHLRTHSGEKPYKCEICKKSFNQNVSLTRHLRTHSGEKPYKCEICNKGLTTSSHLKTHLRMHSGEKPYKCEICKKRFNESGTLKTHQRIHSEEKPYKCEICSKGLTTSSHLKTHLRIHSGEKPYKCEICKKRFNQSCHLKAHLRTHSGEKPYKCEICKKRFNQSQHLKKHVRIHSGEKAYKCEICNKRFNQSGHLKTHLRMHFGEKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00648768;
90% Identity: iTF_00648767;
80% Identity: iTF_00648351;