Basic Information

Insect: Endotricha flammealis
Gene Symbol: -
Assembly: GCA_905163395.1
Location: LR990879.1:8052821-8057598[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.26 8.2e+02 1.1 0.3 21 40 40 60 33 67 0.78

2 10 0.22 6.8e+02 1.4 0.0 24 49 366 391 357 394 0.82

3 10 0.0055 17 6.5 0.2 21 46 391 416 383 419 0.89

4 10 0.0039 12 7.0 0.5 21 52 419 450 415 452 0.87

5 10 0.12 3.7e+02 2.2 0.1 21 46 447 472 443 479 0.83

6 10 0.0067 21 6.2 0.1 18 46 471 500 456 507 0.80

7 10 0.0014 4.5 8.4 0.0 10 45 491 527 485 534 0.84

8 10 0.00041 1.2 10.1 0.1 9 52 518 562 512 563 0.84

9 10 0.013 39 5.4 0.0 21 52 559 590 555 591 0.87

10 10 0.062 1.9e+02 3.1 0.1 21 46 587 612 583 618 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.26	8.2e+02	1.1	0.3	21	40	40	60	33	67	0.78
2	10	0.22	6.8e+02	1.4	0.0	24	49	366	391	357	394	0.82
3	10	0.0055	17	6.5	0.2	21	46	391	416	383	419	0.89
4	10	0.0039	12	7.0	0.5	21	52	419	450	415	452	0.87
5	10	0.12	3.7e+02	2.2	0.1	21	46	447	472	443	479	0.83
6	10	0.0067	21	6.2	0.1	18	46	471	500	456	507	0.80
7	10	0.0014	4.5	8.4	0.0	10	45	491	527	485	534	0.84
8	10	0.00041	1.2	10.1	0.1	9	52	518	562	512	563	0.84
9	10	0.013	39	5.4	0.0	21	52	559	590	555	591	0.87
10	10	0.062	1.9e+02	3.1	0.1	21	46	587	612	583	618	0.85

Sequence Information

Coding Sequence: ATGTCTTTTCTAGCTGTATGTAGATTATGCTTATCTGTAAACACAAAAATGCATTTTATTTGCAACACACCATTACAGGAAGTTTATGAAAAACTGACGAGATGTTCTCTATACACATCGCAGAAACCAGTAGTGGCATGTTACATATGCTTAGCGCACCTCCAGAGTGCTCGCACACTGATGTTGAGGGCTTTGAAAGCTGAGGGAGTGCTCACAGAGATCCTGAATACAGAACCATTGCTCACAGAAAAATCAATAACAATTATTGACAGGGCGTCATATAAACTAAACAGCCCATTGACTTGTTCGCAAATAGAGCATATTGTTGTGGGTTCAACTCCTGTGAAAATTGAGGTGAAAGAAGAACCGACATATTTGGAGATTGAAAAGAAAAATATAGACATAGAACAAGACTCACCTCTCCAAGACCAAGAAACAATAGAATCAGACCAGGACGAAACACAACCTACTGTGTCCGACTCCGAAGATGATCTACCACTCACCACAGTAAAAACGAAGGAAAAAATTAAAGGGAGACCTCATTTGAAAGTTACGAAAAATGATTTAGTCGTCAAGCCAGTGGAAGAACAAAACGTCCCATCTACACAGAGGTTTTGTGAAGATTGCAATATACAATTTAAAACTTTGGAGGCGTGGAAATGTCATAAACTTACTTCACCTAAACATACTATAGACAGTGGTGGCAGAACAATGAAACTAATTCTGCGCAAGTACAATCCGCCGCGGGGACTCGCAGCTAAATATGGTGAACCTCCAATGAAGAAAACTGAAGTAACACACACGGATATAAATGAAAAAACAAATTTACAAATCAACGCAAATATTCAACCAAGATGTCACGAAACAGAAATAAATAACGCAGTTATTATTGAAACGCCAAAACCAAAAAATATTAACAAAACTACGTGTAACCAAACCGACATTGAATATATTTGCGACGATTGCGGCTCCAAATTCGATGATAAATGTTTACTTACTAAACATATAGAACATCATAATTTAATGAAATCTAAAATTCAATTGAGTTATAACAAAGGTATTTTAAACGCGTCTTCATTGACAGGAAAAGATAAATCAAATATGTGCGAAATATGTAACAAGGGATTTACTACAAGTAGTCATTTAAAAACTCATCTAAGAATACACTCGGGAGAAAAGCCTTATAAATGTGAGATATGTAATAAGAGATTTATTCAAAGTGAACATTTAAAAATCCATTTAAGAATACACTCGGGAGAAAAGCCTTATAAATGTGAGATATGTAATAGGAGATTTATTCAAAGTGAACATTTAAAAATCCATTTAAGAATACACTCGGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTAATGAAAGTGGTCATTTCAAAACCCATCTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGTTTTAATGAAAGTGGTACTTTAAAAAAACATATAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGTTTTAATGAAAGTGGTACTTTAAAAAAACATATAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTATTCAAAGTGGTATTTTAAAAACCCATCTAAGAATACACTCCGGGGAAAAGCCTTATAAATGTGAGATATGTAACAAGGGATTTACTACAAGTAGTCATTTAAAAACCCATCTAAGAATTCACTCTGGAGAAAAGCCATATCTGTGTGAGATATGTAAGAAGAGATTTAATAGAAGTGGTAGTTTAAAAATCCATTTAAGAACACACTCAGAAGAAAAGCCTTAG
Protein Sequence: MSFLAVCRLCLSVNTKMHFICNTPLQEVYEKLTRCSLYTSQKPVVACYICLAHLQSARTLMLRALKAEGVLTEILNTEPLLTEKSITIIDRASYKLNSPLTCSQIEHIVVGSTPVKIEVKEEPTYLEIEKKNIDIEQDSPLQDQETIESDQDETQPTVSDSEDDLPLTTVKTKEKIKGRPHLKVTKNDLVVKPVEEQNVPSTQRFCEDCNIQFKTLEAWKCHKLTSPKHTIDSGGRTMKLILRKYNPPRGLAAKYGEPPMKKTEVTHTDINEKTNLQINANIQPRCHETEINNAVIIETPKPKNINKTTCNQTDIEYICDDCGSKFDDKCLLTKHIEHHNLMKSKIQLSYNKGILNASSLTGKDKSNMCEICNKGFTTSSHLKTHLRIHSGEKPYKCEICNKRFIQSEHLKIHLRIHSGEKPYKCEICNRRFIQSEHLKIHLRIHSGEKPYKCEICKKRFNESGHFKTHLRTHSGEKPYKCEICKKSFNESGTLKKHIRTHSGEKPYKCEICKKSFNESGTLKKHIRTHSGEKPYKCEICKKRFIQSGILKTHLRIHSGEKPYKCEICNKGFTTSSHLKTHLRIHSGEKPYLCEICKKRFNRSGSLKIHLRTHSEEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00648768;
90% Identity: iTF_00648767;
80% Identity: iTF_00648361;