Basic Information

Insect: Endotricha flammealis
Gene Symbol: -
Assembly: GCA_905163395.1
Location: LR990879.1:8484876-8490031[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.34 1e+03 0.8 0.3 21 40 40 60 34 67 0.77

2 13 0.29 9e+02 1.0 0.0 24 49 366 391 361 394 0.82

3 13 0.033 1e+02 4.0 0.1 21 45 391 415 383 418 0.88

4 13 0.0092 28 5.8 0.0 21 49 419 447 415 450 0.86

5 13 0.0052 16 6.6 0.2 21 46 447 472 443 478 0.86

6 13 0.083 2.6e+02 2.7 0.1 21 45 475 499 471 502 0.86

7 13 0.0017 5.1 8.2 0.1 21 46 503 528 491 534 0.82

8 13 0.0041 13 6.9 0.1 21 45 531 555 527 558 0.89

9 13 0.0061 19 6.4 0.0 21 52 559 590 555 592 0.86

10 13 0.00051 1.6 9.8 0.3 10 52 603 646 595 647 0.84

11 13 0.019 58 4.8 0.4 21 45 643 667 639 669 0.90

12 13 0.0012 3.6 8.7 0.1 21 46 671 696 667 701 0.88

13 13 0.015 48 5.1 0.1 22 49 700 726 695 729 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.34	1e+03	0.8	0.3	21	40	40	60	34	67	0.77
2	13	0.29	9e+02	1.0	0.0	24	49	366	391	361	394	0.82
3	13	0.033	1e+02	4.0	0.1	21	45	391	415	383	418	0.88
4	13	0.0092	28	5.8	0.0	21	49	419	447	415	450	0.86
5	13	0.0052	16	6.6	0.2	21	46	447	472	443	478	0.86
6	13	0.083	2.6e+02	2.7	0.1	21	45	475	499	471	502	0.86
7	13	0.0017	5.1	8.2	0.1	21	46	503	528	491	534	0.82
8	13	0.0041	13	6.9	0.1	21	45	531	555	527	558	0.89
9	13	0.0061	19	6.4	0.0	21	52	559	590	555	592	0.86
10	13	0.00051	1.6	9.8	0.3	10	52	603	646	595	647	0.84
11	13	0.019	58	4.8	0.4	21	45	643	667	639	669	0.90
12	13	0.0012	3.6	8.7	0.1	21	46	671	696	667	701	0.88
13	13	0.015	48	5.1	0.1	22	49	700	726	695	729	0.84

Sequence Information

Coding Sequence: ATGTCTTTTCTAGCTGTATGTAGATTATGCTTATCTGTAAACACAAAAATGCATTTTATTTGCAACACACCATTACAGGAAGTTTATGAAAAACTGACGAGATGCTCTCTATACACATCGCAGAAACCAGTAGTGGCATGTTACATATGCTTAGCGCACCTCCAGAGTGCTCGCACACTGATGTTGAGGGCTTTGAAAGCTGAGGGAGTGCTCACAGAGATCCTGAATACAGAACCATTGCTCACAGAAAAATCAATAACAATTATTGACAGGGCGCCATATAAACTAAACAGCCCATTGACTTGTTCGCAAATAGAGCATATTGTTGTGGGTTCAACTCCTGTGAAAACTGAGGTGAAAGAAGAACCGACATATTTGGTGATTGAAAAGATAAATATAGACATAGAACAAGACTCACCTCTCCAAGACCAAGAAACAATAGAATCAGACCAGGACGAAACACAACCTACTGTGTCCGACTCCGAAGATGATCTACCACTCACCACAGTAAAAACGAAGGAAAAAATTAAAGGGAGACCTCATTTGAAAGTTACGAAAAATGATTTAGTCGTCAAGCCAGTGGAAGAACAAAACGTCCCATCTACACAGAGGTTTTGTGAAGATTGCAATATACAATTTAAAACTTTGGAGGCGTGGAAATGTCATATACTTACTTCACCTAAACATACTATAGACAGTGGTGGCAGAACAATGAAACTAATTCTGCGCAAGTACAATCCGCCGCGGGGACTCGCAGCTAAATATGGTGAACCTCCAATGAAGAAAACTGAAGTAACACACACGGATATAAATGAAAAAACAAATTTACAAATCAACGCAAATATTCAACCAAGACGACAGGAAACAGAAATAAATAACGCAGTTATTATTGAAACGCCAAAACCAAAAAATATTAACAAAACTACGTGTAACCAAACCGACATTGAATATATTTGCGACTATTGCGGCTCCAAATTCGATGATAAATGTTTACTTACTAAACATATAGAACATCATAATTTAATGAAATCTAAAATTCAATTGAGTTATAACAAAGGTAGTTTAAACGCGTCTTTATTGACAAGAAAAGATAAATCAAATATGTGCGAAATATGTAACAAGGGATTTACTACAAGTAGTCATTTAAAAACCCATCTAAGAATACACTCAGGAGAAAAGCCTTACAAATGTGAGATATGTAATAAGAGATTTAATAGAAGTGGTCATTTAAAAAACCATTTAACAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAACAAGGGATTTACTCAAAGAAGTGATTTAAAAACTCATCTAAGAATACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTAATCAAAATGTTAGTTTAACAAGACATTTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAATAAGAGATTTAATGAAAGTGGTAGATTAAAAATACATTTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGTTTTAATCAAAATGTTAGTTTAACAAGACATTTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGTTTTAATCAAAATGTTAGTTTAACAAGACATTTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAATAAGGGACTTACTACAAGTAGTCATTTAAAAACTCATCTAAGAATGCATTCTGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTAATGAAAGTGGTACTTTAAAAACCCATCAAAGAATACACTCAGAAGAAAAGCCTTACAAATGTGAGATATGTAGTAAGGGACTTACTACAAGTAGTCATTTAAAAACTCATCTGAGAATACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTAATCAAAGTTGTCACTTAGAAGCCCATCTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTAATCAAAGTCAACATTTAAAAAAACATGTAAGAATACACTCAGGAGAAAAGGCTTATAAATGTGAGATATGTAATAAGAGATTTAATCAAAGTGGTCATTTAAAAACCCATCTCAGAATGCACTTTGGAGAAAAGCTATAA
Protein Sequence: MSFLAVCRLCLSVNTKMHFICNTPLQEVYEKLTRCSLYTSQKPVVACYICLAHLQSARTLMLRALKAEGVLTEILNTEPLLTEKSITIIDRAPYKLNSPLTCSQIEHIVVGSTPVKTEVKEEPTYLVIEKINIDIEQDSPLQDQETIESDQDETQPTVSDSEDDLPLTTVKTKEKIKGRPHLKVTKNDLVVKPVEEQNVPSTQRFCEDCNIQFKTLEAWKCHILTSPKHTIDSGGRTMKLILRKYNPPRGLAAKYGEPPMKKTEVTHTDINEKTNLQINANIQPRRQETEINNAVIIETPKPKNINKTTCNQTDIEYICDYCGSKFDDKCLLTKHIEHHNLMKSKIQLSYNKGSLNASLLTRKDKSNMCEICNKGFTTSSHLKTHLRIHSGEKPYKCEICNKRFNRSGHLKNHLTTHSGEKPYKCEICNKGFTQRSDLKTHLRIHSGEKPYKCEICKKRFNQNVSLTRHLRTHSGEKPYKCEICNKRFNESGRLKIHLRTHSGEKPYKCEICKKSFNQNVSLTRHLRTHSGEKPYKCEICKKSFNQNVSLTRHLRTHSGEKPYKCEICNKGLTTSSHLKTHLRMHSGEKPYKCEICKKRFNESGTLKTHQRIHSEEKPYKCEICSKGLTTSSHLKTHLRIHSGEKPYKCEICKKRFNQSCHLEAHLRTHSGEKPYKCEICKKRFNQSQHLKKHVRIHSGEKAYKCEICNKRFNQSGHLKTHLRMHFGEKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00648768;
90% Identity: iTF_00648353; iTF_00648766; iTF_00648773; iTF_00648361; iTF_00648351;
80% Identity: iTF_00648353;