Efla017360.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990879.1:8660901-8666333[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.26 8.1e+02 1.1 0.3 21 40 40 60 33 67 0.78 2 9 0.62 1.9e+03 -0.1 0.0 21 45 363 387 353 390 0.82 3 9 0.011 35 5.5 0.1 18 46 387 416 378 422 0.79 4 9 0.037 1.2e+02 3.9 0.1 21 45 419 443 415 446 0.88 5 9 0.00095 2.9 9.0 0.0 21 47 447 473 436 479 0.81 6 9 0.033 1e+02 4.0 0.1 21 46 475 500 471 506 0.84 7 9 0.02 60 4.8 0.2 21 46 503 528 499 531 0.86 8 9 0.0051 16 6.6 0.1 21 45 531 555 527 558 0.90 9 9 0.0038 12 7.0 0.1 21 45 559 583 555 589 0.89
Sequence Information
- Coding Sequence
- ATGTCTTTTCTAGCTGTATGTAGATTATGCTTAACTGTAAACACAAAAATGCATTTTATTTGCAACACACCATTACAGGAAGTTTATGAAAAACTGACGAGATGTTCTCTATACACATCGCAGAAACCAGTAGTGGCATGTTACATATGCTTAGCGCACCTCCAGAGTGCTCGCACACTAATGTTGAGGGCTTTGAAAGCTGAGGGAGTGCTCACAGAGATCCTGAATACAGAACCATTGCTGACAGAAAAATCAATAACAATTATTGACAGGGCGTCATATAAACTAAACAGCCCATTGACTTGTTCGCAAATAGAGCATATTGTTGTGGGTTCAACTCCTGTGAAAACTGAGGTGAAAGAAGAACCGACATATTTGGAGATTGAAAAGAAAAATATAGACATAGAACAAGACTCACCTCTCCAAGACCAAGAAACAATAGAATCAGACCAGGACGAAACACAACCTACTGTGTCCGACTCCGAAGATGATCTACCATTCACCACAGTAAAAATAAAGGTAAAAATTAAAGGGAGACCTCATTTGAAAGTTACGAAAAATGATTTAGTCGTCAAGCCAGTGGAAGAACAAAACGTCCCATCTACACAGAGGTTTTGTGAAGATTGCAATATACAATTTAAAACTTTGGAGGCGTGGAAATGTCATATACTTACTTCACCTAAACATACTATAGACAGTGGTGGCAGAACAATGAAACTAATTCTGCGCAAGTACAATCCGCCGCGGGGACTCGCAGCTAAATATGGTGAACCTCCAATGAAGAAAACTGAAGTAACACACACGGATATAAATGAAAAAACAAATTTACAAATCAACGCAAATATTCAACCAAGATGTCACGAAACAGAAATAAATAACGCAGTTATTATTGAAACGCCAAAACCAAAAAATATTAACAAAACTACGTGTAACCAAACCAACATTGAATATATTTGCGACGATTGCGGCTCCAAATTCGATGATAAATGTTTACTTACTAAACATATAGAACATCATAATTTAATGAAATCTAAAATTCAATTGAGTTATAACAAAGGTAGTTTAAACGCGTCTTCATTGACAAGAAAAGATAAATCAAATATGTGCGAAATATGTAACAAGGGATTTACTACAAGAGGTAATTTAAAAACCCATCTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGTTTTAATCACAATGTTAGTTTAACAAGACATTTAAGAACACACTCAGGAGAAAAGCCTTACAAATGTGAGATATGTAAGAAGAGATTTAATGAAAGTGGTCATTTAAAAACCCATCTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTAATGAAAGTGGTAATTTAAAAACCCATCTAAGAACGCACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAGTAAGAGATTTAATAAAAGTGGTCATTTAAAAATCCATTTAAGAACACACTCGGAAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTAATCGAAGTGAACATTTAAAAATCCATCTAAGAATACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAATAAAATTTTTAATCAAAATAGTGATTTAACAACACATTTAAGAACACACTCAGGAGAAAAGCCTTATAAATGTGAGATATGTAAGAAGAGATTTACTACAAGTGGTTCTTTAAAAAGACATCTAAGAAAACACTCAGGAGAAAAGCATACTTCTGAGATATGTAAGAAGAGATTTACTGCCATAATAAAATACAGAGCGAAGCCGCGGGGAAAAGCTAGTGTGATATAA
- Protein Sequence
- MSFLAVCRLCLTVNTKMHFICNTPLQEVYEKLTRCSLYTSQKPVVACYICLAHLQSARTLMLRALKAEGVLTEILNTEPLLTEKSITIIDRASYKLNSPLTCSQIEHIVVGSTPVKTEVKEEPTYLEIEKKNIDIEQDSPLQDQETIESDQDETQPTVSDSEDDLPFTTVKIKVKIKGRPHLKVTKNDLVVKPVEEQNVPSTQRFCEDCNIQFKTLEAWKCHILTSPKHTIDSGGRTMKLILRKYNPPRGLAAKYGEPPMKKTEVTHTDINEKTNLQINANIQPRCHETEINNAVIIETPKPKNINKTTCNQTNIEYICDDCGSKFDDKCLLTKHIEHHNLMKSKIQLSYNKGSLNASSLTRKDKSNMCEICNKGFTTRGNLKTHLRTHSGEKPYKCEICKKSFNHNVSLTRHLRTHSGEKPYKCEICKKRFNESGHLKTHLRTHSGEKPYKCEICKKRFNESGNLKTHLRTHSGEKPYKCEICSKRFNKSGHLKIHLRTHSEEKPYKCEICKKRFNRSEHLKIHLRIHSGEKPYKCEICNKIFNQNSDLTTHLRTHSGEKPYKCEICKKRFTTSGSLKRHLRKHSGEKHTSEICKKRFTAIIKYRAKPRGKASVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00648768;
- 90% Identity
- iTF_00648365;
- 80% Identity
- iTF_00648365;