Dvar000403.1
Basic Information
- Insect
- Drosophila varians
- Gene Symbol
- MBD2
- Assembly
- GCA_018150405.1
- Location
- JAECWK010000129.1:4526181-4527678[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-14 1.7e-10 40.1 0.0 3 45 9 65 7 66 0.87 2 2 5.1e-06 0.013 14.9 0.0 27 76 167 227 146 228 0.92
Sequence Information
- Coding Sequence
- ATGCAAATGAATCCCAGCATCACAATTGAACGCAAACGCGTCGATGTCCTTCCCAAAGGATGGCAGCGCGACGAAGTCCGCAAGTCGGCCAGCAGCACCAACAGTAACGCCAGCATCACATCGAATAGCAGCACCAACAACAACAACAAGGTGGATGTTTTCTACTACAGTCCAACAGGCAAGAGCAAGCGTAGCGAGGGTCTGGACACTGGAAATGTAGACTTTTCCGCCGGCAAGGTGGAGCAGCGCCCACTGCCCTCGCCCTCCATCTCGTTGTACCGCTGCAGTGCCATGCCAATGCCTTTGGCTGGAGGCAACGGGAGCGGAAGCGGTGCACCTGCCCTCAAGCGAAAGTATGCTCGTTCGCAACTGGGCCAAGGACCAGGAGCAGGTGCAGCAGTTACAGCTACTCCAACAACAGCTGCAGCAACCACTAACTCAACGTCTATACCAACGACCGCTGGCAATCCGCGCCAGCAGCAACATCTTGAACTCAGTCGGGCATTACGTACAGATGTCTCCCTTGTACCGCCTATTCGACAGACTGCTTCGATTTTTAAACAACCGGTAACGTCGATCCGGAACCACGACCAGGATACCGGAAAGGTAAAACACGACGCCAAAAACGGCACTCAGGAAAAGCCAAAGCAGCTGTTTTGGGAAAAGAGACTGGAACGTCTGCGCGCCTGCCACGACAATGGCGAAGAGCTCGACGACATTTCACTGCCCAAGACCATACGCACCGTTGGCCCTAACGTCAACGAACAGACCGTCCTCCAGTCGGTGGCCACAGCTCTGCACATGCTAAATGCTGGTGTCCACGGCCAAAGTTCGACCAAGGCCGAGTTAACCAAGAATGCTATGGCCTTTATGAATCCCGAACAGCCGCTAATGCATGCGGTGATCATATCCGAAGACGACATTCGGAAGCAGGAAGATCGGGTTGGCGTCGCGCGTCGCAAGTTACAGGATGCGCTCAAGACGTGA
- Protein Sequence
- MQMNPSITIERKRVDVLPKGWQRDEVRKSASSTNSNASITSNSSTNNNNKVDVFYYSPTGKSKRSEGLDTGNVDFSAGKVEQRPLPSPSISLYRCSAMPMPLAGGNGSGSGAPALKRKYARSQLGQGPGAGAAVTATPTTAAATTNSTSIPTTAGNPRQQQHLELSRALRTDVSLVPPIRQTASIFKQPVTSIRNHDQDTGKVKHDAKNGTQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVGVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00550245; iTF_00481534; iTF_00477330; iTF_00614899; iTF_00566086; iTF_00488016; iTF_00538960; iTF_00545959; iTF_00579977; iTF_00503986;
- 90% Identity
- iTF_00477330;
- 80% Identity
- -