Dpse001354.1
Basic Information
- Insect
- Drosophila pseudoananassae
- Gene Symbol
- MBD2
- Assembly
- GCA_018153035.1
- Location
- JAECXR010000055.1:3057437-3058937[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-05 0.1 12.0 0.1 4 28 10 34 7 55 0.79 2 2 2.1e-06 0.0064 15.9 0.0 26 76 140 201 122 202 0.92
Sequence Information
- Coding Sequence
- ATGCAAATGAACCCCAGCGTAACAATTGAACGCAAACGCGTTGATGTCCTGCCCAAAGGATGGCAACGAGACGAGGTCCGCAATCCCACAGGCAAGAGGGCCGAGAGCAAGCGTGGCGAGGGACTGGACACCGGAAATCTTGACTTTTCAGTCGGCAAGGTGGAGCAGCGGCCACTGCCCTCGCCATCCATCTCGTTGTACCGCTGCAGTGCCATGCCAATGCCTCTGACTGGAGGCAATGGAAGCGGTAGCGGTGGACCTGCACTGAAGCGAAAGTATGCCCGTTCGCAACTGGGCCAAGGACCAGGAACAGGTGCCGCCGTCACAGCTACGCCAGCAGCAGCCGCAGCAACAACTAATCCAACGGTTACTGCCACGACCGCCGGCAATCCCCGCCAGCAGCAACAGCTTGAACTCAGTCGGGCATTACGTACAGATGTCTCCCTGGTGCCACCTATTCGACAGACTGCCTCAATTTTTAAGCAGCCGGTAACGGCGATCCGCAACCACGAACAGGATCCTGGAAAGGCAAAACACGATGCCAAACACGGCACTCAGGAAAAGCCAAAGCAGCTATTTTGGGAAAAGAGACTGGAACGGCTACGCGCCTGCCACGACAATGGGGAAGAGCTCGATGATATTTCACTGCCCAAGACCATACGCACCGTTGGCCCCAATGTCAACGAACAGACCGTCCTCCAGTCGGTGGCCACAGCTCTGCACATTCTGAATGCTGGTGTCCATGGCCAAAGTTCGACCAAGGCCGAGTTAACCAAAAACGCCATGGCGTTCATGAATCCCGAACAGCCGCTGATGCATGCGGTGATCATATCCGAGGACGACATTCGGAAGCAGGAAGATCGGGTCAGCGTGGCGCGACGAAAGTTACAGGATGCGCTCAAGACATGA
- Protein Sequence
- MQMNPSVTIERKRVDVLPKGWQRDEVRNPTGKRAESKRGEGLDTGNLDFSVGKVEQRPLPSPSISLYRCSAMPMPLTGGNGSGSGGPALKRKYARSQLGQGPGTGAAVTATPAAAAATTNPTVTATTAGNPRQQQQLELSRALRTDVSLVPPIRQTASIFKQPVTAIRNHEQDPGKAKHDAKHGTQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHILNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVSVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615554;
- 90% Identity
- iTF_00566086;
- 80% Identity
- -