Dano007229.1
Basic Information
- Insect
- Drosophila anomalata
- Gene Symbol
- MBD2
- Assembly
- GCA_035046425.1
- Location
- JAWNNY010000972.1:1044756-1046293[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-14 5.3e-11 42.2 0.0 4 46 10 66 7 69 0.91 2 2 7.7e-06 0.026 14.3 0.0 26 76 170 231 153 232 0.91
Sequence Information
- Coding Sequence
- ATGCAAATGAACCCCAGCGTTACAATTGAACGTAAACGCGTCGATGTCTTGCCCAAAGGATGGCAACGCGACGAGGGTCGCAAGTCGGCTAGCAGCGCCAACAGCAACGCCAGCATCACAACCAATagtagcagcaacaacaacaacaaggtgGATGTTTTCTACTACAGTCCCACAGGCAAGAGGGTCGAGAGCAAGCGTGGTGATGGACTGGACACCGGAAATCTTGACTATCCAGTCGGCAAGGTGGAGCAGCGCCCTCTGCCCTCGCCCTCCATCTCGTTGTACCGTTGCAGTGCCATGCCAATGCCTCTCACTGGTGGCAACGGAAGCGGTAGCGGTGGACCTGCACTGAAGCGAAAGTATGCCCGTTCCCAACTGGGCCAAGGACCACCGGGAACAGGTGCCGCAGTCACAGCTactccagcaacagcagcagcaaccactAATCCGACGGTTACTGCGACGACCGCCGGCAATCcgcgccagcagcaacagcttgAACTCAGTCGGGCATTACGCACAGATGTCTCCCTGGTGCCACCTATTCGACAGACTGCCTCGATTTTTAAGCAGCCGGTGACGTCGATCCGCAACCACGAACCGGAACCTGGAAAGGTAAAAAACGATGCCAAACACGGCACTCAGGAGAAACCAAAGCAGCTATTTTGGGAAAAGAGGCTGGAACGCCTGCGTGCCTGCCACGACAACGGGGAGGAGCTGGATGATATTTCACTGCCCAAGACCATACGCACCGTTGGCCCTAATGTCAATGAACAGACCGTCCTGCAGTCGGTGGCAACAGCTCTGCACATTCTGAACGCTGGCGTCCACGGCCAAAGTTCGACAAAGGCCGAGTTAACCAAAAACGCCATGGCGTTCATGAATCCCGAACAGCCGCTGATGCATGCGGTGATCATATCCGAGGACGATATTCGGAAGCAGGAAGATCGGGTCAGCGTGGCGCGACGGAAGTTACAGGATGCGCTCAAGACATGA
- Protein Sequence
- MQMNPSVTIERKRVDVLPKGWQRDEGRKSASSANSNASITTNSSSNNNNKVDVFYYSPTGKRVESKRGDGLDTGNLDYPVGKVEQRPLPSPSISLYRCSAMPMPLTGGNGSGSGGPALKRKYARSQLGQGPPGTGAAVTATPATAAATTNPTVTATTAGNPRQQQQLELSRALRTDVSLVPPIRQTASIFKQPVTSIRNHEPEPGKVKNDAKHGTQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHILNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVSVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615554;
- 90% Identity
- iTF_00615554; iTF_00545959; iTF_00614899; iTF_00481534; iTF_00550245;
- 80% Identity
- -