Datr012103.1
Basic Information
- Insect
- Drosophila atripex
- Gene Symbol
- MBD2
- Assembly
- GCA_035045925.1
- Location
- JAWNOP010000069.1:5957121-5958641[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-13 2.6e-10 39.8 0.0 4 46 10 66 7 68 0.91 2 2 7.1e-06 0.018 14.6 0.0 27 76 169 229 152 230 0.91
Sequence Information
- Coding Sequence
- ATGCAAATGAACCCCAGCGTTACAATTGAACGTAAACGCGTCGATGTCCTGCCCAAAGGATGGCAACGCGACGAGGGTCGCAAGGCGGCTAGCAACGCCAACAGCAACGCCAGCATCACAACCAAtagtagcagcaacaacaacaacaaggtgGATGTTTTCTACTACAGTCCCACAGGCAAGAGGGTCGAGAGCAAGCGTGGCGAGGGACTGGACACCGGGAATCTTGACTATCCAGTCGGCAAGGTGGAGCAGCGCCCACTGCCCTCGCCCTCCATCTCTTTGTACCGCTGCAGTGCTATGCCAATGCCTCTGACTGGAGGCAACGGAAGCGGTAGCGGTGGACCTGCACTGAAGCGAAAGTATGCCCGTTCGCAGCTGGGCCAAGGACCGGGAACAGGTGCCGCAGTCCCGACtactccagcagcagcaaccactAATCCGACTGCGGCTACTGCGACGACCGCCGGCAATCCtcgccagcagcaacagcttgAACTCAGCCGGGCATTACGCACAGATGTCTCCCTTGTGCCACCAATTCGACAGACTGCCTCGATTTTTAAGCAGCCGGTGACGGCGATTCGCAACCACGAACCGGAACCTGGAAAGGTAAAACACGATGCCAAACACGGTACTCAGGAGAAACCAAAGCAGCTATTTTGGGAAAAGAGGCTGGAACGTCTGCGTGCCTGCCACGACAATGGGGAAGAGCTCGATGACATTTCACTGCCCAAGACCATACGCACCGTTGGTCCTAATGTCAACGAACAGACCGTCCTGCAGTCGGTGGCCACAGCTCTGCACATTCTGAATGCTGGCGTCCATGGCCAAAGTTCGACAAAGGCCGAGTTAACGAAAAACGCGATGGCGTTCATGAATCCCGAACAGCCACTGATGCATGCGGTGATCATATCCGAGGACGATATTCGGAAGCAGGAAGATCGGGTTAGCGTGGCGCGACGGAAGTTACAGGATGCGCTCAAGACATGA
- Protein Sequence
- MQMNPSVTIERKRVDVLPKGWQRDEGRKAASNANSNASITTNSSSNNNNKVDVFYYSPTGKRVESKRGEGLDTGNLDYPVGKVEQRPLPSPSISLYRCSAMPMPLTGGNGSGSGGPALKRKYARSQLGQGPGTGAAVPTTPAAATTNPTAATATTAGNPRQQQQLELSRALRTDVSLVPPIRQTASIFKQPVTAIRNHEPEPGKVKHDAKHGTQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHILNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVSVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615554;
- 90% Identity
- iTF_00477330;
- 80% Identity
- -