Dmon008618.1
Basic Information
- Insect
- Drosophila monieri
- Gene Symbol
- MBD2
- Assembly
- GCA_035047585.1
- Location
- JAWNPJ010000074.1:3266392-3267914[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-13 6.6e-10 38.6 0.1 4 46 10 66 7 68 0.91 2 2 6.7e-06 0.022 14.5 0.0 27 76 169 229 157 230 0.92
Sequence Information
- Coding Sequence
- ATGCAAATGAACCCCAGCGTTACAATCGAACGTAAACGCGTCGATGTCCTGCCCAAAGGATGGCAACGCGACGATGGTCGCAAGTCGGCTAGCAGCGCCAACAGCAACGCCAGCATCACAACCAATagtagcagcaacaacaacaacaaggtgGATGTTTTCTACTACAGTCCCACAGGCAAGAGGGTCGAGAGCAAGCGTGGCGAGGGACTGGACACCGGGAATCATGACTATCCAGTCGGCAAGGTGGAGCAGCGCCCACTGCCCTCGCCCTCCATCTCCTTGTACCGCTGCAGTGCCATGCCCATGCCTCTGACTGGAGGCAACGGAAGCGGTAGCGGTGGACCTGCACTGAAGCGAAAGTATGCCCGTTCCCAACTGGGCCAAGGACCGGGAACAGGTGCCGCAGTCACAGCtactccagcagcagcaaccactAATCCGACTGCGGTTACTGCGACGATCGCCGGCAATCCccgccagcagcaacagcttgAACTCAGCCGGGCATTACGCACAGATGTCTCCCTGGTGCCACCAATTCGACAGACTGCCTCGATTTTTAAGCAGCCGGTGACGGCGATCCGCAACCACGAACCGGAACCTGGAAAGGTAAAAAACGATGCCAAACACGGTACTCAGGAGAAACCAAAGCAACTATTTTGGGAGAAGAGGCTGGAACGCCTGCGGGCCTGCCACGACAATGGGGAAGAGCTCGATGACATTTCACTGCCCAAGACCATACGCACCGTTGGTCCCAATGTCAACGAACAGACCGTCCTGCAgtcggtggccacagctctgcacATTCTGAATGCTGGCGTCCACGGCCAAAGTTCCACAAAGGCCGAGTTAACCAAAAACGCAATGGCGTTCATGAATCCCGAACAGCCGCTGATGCATGCGGTGATCATATCCGAGGACGATATTCGGAAGCAGGAAGATCGGGTCGGCGTGGCGCGACGGAAGCTACAGGATGCGCTCAAGacatga
- Protein Sequence
- MQMNPSVTIERKRVDVLPKGWQRDDGRKSASSANSNASITTNSSSNNNNKVDVFYYSPTGKRVESKRGEGLDTGNHDYPVGKVEQRPLPSPSISLYRCSAMPMPLTGGNGSGSGGPALKRKYARSQLGQGPGTGAAVTATPAAATTNPTAVTATIAGNPRQQQQLELSRALRTDVSLVPPIRQTASIFKQPVTAIRNHEPEPGKVKNDAKHGTQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHILNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVGVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615554;
- 90% Identity
- iTF_00477330;
- 80% Identity
- -