Dkan009851.1
Basic Information
- Insect
- Drosophila kanapiae
- Gene Symbol
- -
- Assembly
- GCA_008042475.1
- Location
- VNJM01000522.1:25802-27904[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-12 8.4e-09 35.0 0.1 1 44 276 319 276 320 0.91 2 2 7.4 1.5e+04 -4.2 1.1 4 18 416 429 416 431 0.77
Sequence Information
- Coding Sequence
- ATGGGCGGCCCCACAGCGCCCGGTAGCACGGTCGCCAGCAGCGGCGCTGGCGGCGGCGAGTTCAATCATCACTCTAGCTCCAGCGccagtgccacgcccacctcgAGCTCGACGGCGGGCGGCAAGCCGCTGAACGgcggcagccacagccacTCCTCATCCGTGATCTCCACATCCACCCACATCTCGCCCAGCGCCGCCATCTCGAGCAGCTGCTCGccaccacctccgccgccgccgcagttCGGCTGCTATCAGCCCGCCTTCAGTCACCACTATCCGCCGCAGTCGCTGCCGGCCAACAGCCAAGGTCCTGCCGGCCCGGATGCCCCCCTGACGCCCACCCATGTGTCGGCACCGCCCTCAGGCCCCTCGACGGAGACGGGTGGTGGCGGCCAATGGCCCATGACCCcgtccgccgccgctgccatgCTGAACTCCGTTTACGAATCCGCCGCCGACATGAATCCCCTCAAGCGCAAGAAGCTGTCGGCCATCTCGAGCATGCTGCTCAGCGGCAATCGCGACACGCCGATCCTGCGCAATGTCCTGGCCCAGGCCAATCCTGCCGACTCCTCGCAGCCCGGACCGCTGATCCTCAACGGCGAGAAGACGCCCACACATCCACACCAGAATCCCCAGCACTCGACAGCCGGCGGAGTGGGTGTGagtggcggaggcggcggcgagAGGAACCACAGCTTCAATGGCTCCGACTATGGCGGCGACAAGGAGCCCCTCTCCCCGTACACGGATCGCTCCTTCGAGGAGGAGAGCGGCCAGTCCGGCGGCAAGAAGCCGGAGTGGAAGCGCTACAAGCAGTACACGCGGGCGGACATGATGTGCGCCATCCAGGCGGTGCGCGAGGGCATGAGTGCGCTCCAGGCGAGCCGGAAGTACGGCCTGCCCAGTCGCACCCTCTACGACAAGGTGCGCAAGCTGAACATCACCACGGGCCGTGGGACACATCGCACCCCGAAGCGCAGTCCCCCCGGAGCGGAGGCCTCGCAGGGATTCCCCTATTccgctgctgcggcagccgctgctgcccaCAACTACGGCCATGGACACGTGCATCCCTCGGAGTTGAAGCGTGACCCCAAGGGGGATCATGTGCCCGCTCACCACGGCATGCCGCCCACCATTCCGCCCTCGGCCGCGGCTCTGCTGGACCATGCCTTCCTGCAGCAGGCTCTGGAGAACCGAGGCGGCGACATGGCCGGACGGGAGGCCCTCCACGCCATGgccctggctgctgctgcccatgcGGCGGCCAATCGCATGTCCAGCAGTCCGGCGGAGACGGATCAGCGTTCCAACGGCCATGGCATGCGATCGCCCAGTCCCGGTCACTATCAGGACCAGGAGGCCATGGACCTGGAGATGGAGAAGCACGAGCAGCGCTTGATCAAGCGAGAACGCGACCAAGACGAGCGCGAAGAtgccgacgacgaggaggatcaggagcaggagcatgTGGAGGATCTGTCGCTGGCTAGGAAGGAGCGACCCCCGTCGCCCTACTCGCCACAGCCGCCCCAGGTGGGAGCAGAAGCTGCCGGCGTGATCATGCATGCCAGCAGTGCGTCGGCCAACGGCAAGGAGCATGAGCAcgaacgggagcgggagcgggagcgggagcaggaggacTACCCGCACTCGCCGCCGCCCTTCGCCTTGGGCATGGGTCTGAAGCGGGAACTCATCGAGGGCGAggaggcccaggcccaggcgcGGGCCGACTGA
- Protein Sequence
- MGGPTAPGSTVASSGAGGGEFNHHSSSSASATPTSSSTAGGKPLNGGSHSHSSSVISTSTHISPSAAISSSCSPPPPPPPQFGCYQPAFSHHYPPQSLPANSQGPAGPDAPLTPTHVSAPPSGPSTETGGGGQWPMTPSAAAAMLNSVYESAADMNPLKRKKLSAISSMLLSGNRDTPILRNVLAQANPADSSQPGPLILNGEKTPTHPHQNPQHSTAGGVGVSGGGGGERNHSFNGSDYGGDKEPLSPYTDRSFEEESGQSGGKKPEWKRYKQYTRADMMCAIQAVREGMSALQASRKYGLPSRTLYDKVRKLNITTGRGTHRTPKRSPPGAEASQGFPYSAAAAAAAAHNYGHGHVHPSELKRDPKGDHVPAHHGMPPTIPPSAAALLDHAFLQQALENRGGDMAGREALHAMALAAAAHAAANRMSSSPAETDQRSNGHGMRSPSPGHYQDQEAMDLEMEKHEQRLIKRERDQDEREDADDEEDQEQEHVEDLSLARKERPPSPYSPQPPQVGAEAAGVIMHASSASANGKEHEHEREREREREQEDYPHSPPPFALGMGLKRELIEGEEAQAQARAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00540999; iTF_00541155; iTF_00594472; iTF_00594627; iTF_00485227; iTF_00485063; iTF_00569617; iTF_00569764; iTF_00490004; iTF_00490160; iTF_00561684; iTF_00561842; iTF_00524343; iTF_00524492; iTF_00613432; iTF_00617562; iTF_00617731; iTF_00492157; iTF_00492314;
- 90% Identity
- iTF_00606236;
- 80% Identity
- -