Dnik021199.1
Basic Information
- Insect
- Drosophila nikananu
- Gene Symbol
- fru
- Assembly
- GCA_008042635.1
- Location
- VNJV01009874.1:12856-14958[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.2e-12 1.4e-08 34.7 0.1 1 44 399 442 399 443 0.91
Sequence Information
- Coding Sequence
- ATGGGCGGCCCCACAGCGCCCGGCAGCACGGTcgccagcagcggcggcgcaggCGGCGAGGTGGGTCAGACCTACTGCCTGCGCTGGAACAACCACCAGACGAACCTGGTACAGATCCTGCATGCCCTGCACGAGGTGGGCAGCTATGTGGACTGCACCCTGGTCGTCGACGACGAGCAGTTCCAGGCCCATCGCGTTGTCCTGGCCGCCAATTCGCCGTATTTCCAGCACATTTTGCGCGATGTGCCGCAGGATCACTGCAGCATCATCCTGCCCGGTGTCAAGGGCTTCGAAATTGCGGCCCTGCTGCAGTACATGTACACGGGGGAGACGACGGTGACCAAGAGCCAGGAGCCAGAGATCCTGCGCACCGCCAAGGAGCTGCAGGTCAAGGGGCTCTACGACAACCTCATGAAGTTCAATCATCATGCCAGctccagtgccagtgccacgcccacctccAGCTCGACGGCGGGTGGGAAACCCCTAAATGGAGGCAGCCACAGCCACTCCTCGTCCGTGATCTCCACATCCACCCACATTTCGCCCAGTGCCGCCATCTCGAGCAGCTGctcgccaccaccaccaccgccgccccAGTTTGGCGGCTACCAGCCCGCCTTCAGTCACCACTATCCGCCGCAGTCGCTGCCGGCGAGCAGCCAAGGACCTGCCGGTTCAGAGCCCCCGCTGACACCCACTCATGTGACGGCGCCACCCTCATCGGGACCATCATCGGACGCGGGAGCTGGCGGCCAATGGCCCATGACCCCgtccgctgccgctgccatgCTGAACTCCGTTTACGAATCCGCCGCCGATATGAATCCCCTCAAGCGCAAGAAGCTGTCGGCCATCTCGAGCATGCTGCTCAGCGGCAATCGCGACACACCGATCCTGCGCAATGTCCTGGCCCAGGCCAATCCCGCTGACTCCTCGCAACCAGGACCTCTGATACTCAATGGCGAGAAGACCCCCACGCATCCGCACCAGAATCCCCAGCACTCGACGGCCGGCGGAGTGGGTGTGagtggaggcggcggcggtggcggcggagaGAGGAACCATAGCTTCAATGGCTCCGATTATGGTGGCGACAAGGAGCCCCTGTCCCCGTACACCGATCGGTCCTTCGAGGAGGAGACCGGCCAGTCTGGCGGCAAGAAGCCGGAGTGGAAGCGCTACAAGCAGTACACGCGGGCGGACATGATGTGCGCCATCCAGGCGGTGCGCGAGGGCATGAGTGCGCTCCAGGCGAGCCGCAAGTACGGCCTGCCCAGTCGCACCCTGTACGACAAGGTGCGCAAGCTGAACATCACCACCGGCAGGGGCACCCATCGCACCCCGAAGCGTAGTCCTCCCGGGGCGGAGGCCTCACAGGGATTCCCCTATTCGGCGgccgctgcagctgcggctgcCCACAACTATGGCCATGGACACGTGCATCCCTCGGAGCTGAAGCGTGACCCGAAGGGCGATCATGTGCCCGCTCACCATGGCATGCCGCCCACCATTCCTCCCTCGGCGGCCGCCCTGCTGGATCATGCCTTCCTGCAGCAGGCTCTGGAGAATCGAGGAGGCGACATGGCCGGCCGCGAGGCTCTCCATGCCATGGCCTTGGCCGCCGCTGCCCATGCCGCAGCCAATCGCATGTCCAGCAGTCCGGTGGACACGGATCAGCGTTCCAATGGCCATGGCATGCGATCACCGAGTCCTGGCCGTCACTATCAGGACCAGGAGGCCATGGACCTGGAGATGGAGAAGCATGAGCAGCGCTTGATCAAGCGAGAGCGCGACCAGGATGAGCGCGAAGACGCTGACGATGAGGAGGATCACGAGCAGGAGCATGTGGAGGATCTGTCGCTGGCGCGGAAGGAGCGACCCCCATCGCCCTACTCCCCTCAGCCGCCACAGGTGGAGGGAGGCGGAGCTGCCGGTGTGATCATGCATGCCAGCAGTGCCAACGGCAAGGAGCACGAGCACGAGCatgagcgggagcgggagcaggaggACTATCCACACTCGCCGCCACCCTTCGCCCTGGGCATGGGCCTCAAGCGGGAACTCATCGAGGGCGAGGAGTCCCAGGCGCGGGCCGACTGA
- Protein Sequence
- MGGPTAPGSTVASSGGAGGEVGQTYCLRWNNHQTNLVQILHALHEVGSYVDCTLVVDDEQFQAHRVVLAANSPYFQHILRDVPQDHCSIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNHHASSSASATPTSSSTAGGKPLNGGSHSHSSSVISTSTHISPSAAISSSCSPPPPPPPQFGGYQPAFSHHYPPQSLPASSQGPAGSEPPLTPTHVTAPPSSGPSSDAGAGGQWPMTPSAAAAMLNSVYESAADMNPLKRKKLSAISSMLLSGNRDTPILRNVLAQANPADSSQPGPLILNGEKTPTHPHQNPQHSTAGGVGVSGGGGGGGGERNHSFNGSDYGGDKEPLSPYTDRSFEEETGQSGGKKPEWKRYKQYTRADMMCAIQAVREGMSALQASRKYGLPSRTLYDKVRKLNITTGRGTHRTPKRSPPGAEASQGFPYSAAAAAAAAHNYGHGHVHPSELKRDPKGDHVPAHHGMPPTIPPSAAALLDHAFLQQALENRGGDMAGREALHAMALAAAAHAAANRMSSSPVDTDQRSNGHGMRSPSPGRHYQDQEAMDLEMEKHEQRLIKRERDQDEREDADDEEDHEQEHVEDLSLARKERPPSPYSPQPPQVEGGGAAGVIMHASSANGKEHEHEHEREREQEDYPHSPPPFALGMGLKRELIEGEESQARAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00525809;
- 90% Identity
- iTF_00606236;
- 80% Identity
- iTF_00561842;