Basic Information

Gene Symbol
TRERF1
Assembly
GCA_035041595.1
Location
JAWNLB010000090.1:4038965-4054270[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7e-09 5.9e-06 26.1 0.1 2 45 1748 1791 1747 1792 0.93

Sequence Information

Coding Sequence
ATGGCTGCCATAAATACGGTATCCAAAAGCATACATCTGCCTCTGACGAATCTCAGCGCTCAGCGTGTGTTGATGTGCAGCGCCTCTCTGGGCAGCGAGGGATCCGTGACACTGCAACTGAGAGATGCGAGTACCTTGGGGACGGCAGCCGATagcacaacaccaacaacaacatcgacatcgacatcagcaacagcagcaacaacaacaacaacaacatcaaaccCAATAGCAACATCGTCATTGAGCAGCCAATCAAATGGCGTCACAGTGCTTGAGACATCGTCATCAGCTGTGTCAGGAATAACGTCAGCATTAGAGAATGCTCTGACCGTTGGCTATCCGGATCCGGAAATGCTAGCAGATGTTTTAGGCACCATTCAGACAGCCTctcttaaaaacaatcataacaacagcagtaataatagcaataacaacaccagcatcaaaagaagcaacaacaacaagagcagcagcactgcATCGACAATTCTGAACAGCTCCGGGATACATCTGAACAGTCCCAATAAAATAACGATAACACGTCGCAGTGCCAGCAACAAGATTAGCGTACAGACTGTGAGCACATCGACGAACACAACGATTAGCAGCATTGGCGGCAGCAAGACCAACTACATTAAGAACTGTCTAatacgcagcagcagctgcagcaacacaGCCACCAATGTTACAACGTTGGCACAGATtctgagcaacagcagcaccagcagcgcaGCCAGTTTACTCAGTcagcacaataacaatagcaactgcagcaacagcagcaactttagCATCGCATCCTCTGTGGGCAGCATttgcagcgtcagcagcaataccagcaacaccagcagcagcagcaattgtagcagcagcaatagcaacgatagcaacagcagcctcgGTCAAAGCTTAAGCTTCAAAAGCAATGGGCGAAATGTTGCTGGCATAGTTACTGCATCAACAACATCCAcgagcacagcagcaactggcattggcattgtcaCCGTCGACAACGCGCCCAGAAAGAGTCGACCCAAATTATCCTCCCCTACGCGTCACGGACCTCAGCAGTGTCAGatttgtagCAAGATCTTTGGAAATGCCTCGGCGTTGGCCAAGCACAAATTGACGCACAGCGACGAAcggaaatatatttgtgcgcTCTGCTCGAAGGCATTCAAGCGCCAAGATCACTTAAACGGACACATGATGACGCATAGAAACAAGAAGCCTTACGAGTGTCGAGCGGATGGCTGTGGCAAATCATATTGCGATGCGCGCTCCCTTCGTCGTCATTCAGAGAATCACCATGGATGCGTGCCGACCAGCGAATCACTCTCGCCCACGGCCAGCTCCAACGGCAATGTCAGCAACGGCACCGGCAGCGTCACTGGCAGCgggagcagcagtagcagcaacaacggcatcGGAGTTGCCACCAGTTCCCTGAGCCTATCGCCGGCTACGGCCAGCGGGGATGCCAGCTCACCGGATGGCGCCACCTGCATTCGCACATATATTTCCACTGGTAGCTCCATTGTGGATGCGGCCACTGGAATTGCGCTGTCCGATGAGCAAATCAGGGCAATGAATTTGCCCATCAAAACGGGTGTTACTCTGCTTTCGCCCACCACATCGACATGCTCGACAACATCTTCCACCGCATCTTCTATATCATGCTCGTCATcgggcaatggcaacggcagctCCGTTGTGGCCAGTTCACCCACCATAACACTCTGTGATGGCGCAACGCTGGAGGCCGAGGGACTCACACGCGAGCAACTCGATCTCATCAGCAAGATCATGCAGCAGACGAAGCAAACCAGTGCCCAGGTCACAGTCTCGTCGCCCACCAGCGTTAGTTCCTATAAAATCAATACGGAAACAGCTCAGGTCTCGGCGCGACCAAGGACCTGGAACATGCAATTGCTCAataatgtgcaaaatgtgACGCTTACAGTGGACGAGGGCACCGAACTGGTTGCCTCCGCATCAAGCCCACCCGACGAGGTAAAGGACGATGAGCTGGGCCAGCAACAGTTAGTGACCGCCATAAATCCCCACCTGCTCAACATTGTGAAGGTCGACAAGCCAGTTGAGTGTAATCTCTGTCACCGTAAGTTCAAAAATGTGCCCGCCCTCAATGGGCATATGCGTCTGCATGGCGGCTACTTCAAAAAGGATCCGGAGACGAAGCGTAGCGAGAAGAAGGACTCCGGCGGACCTCCCCTGCAGACAGCCAGCATTGGAGTGCGTGCCCTCATCGAGGAGAAGATTATAAGCAAGCGCAAGGACATCAATAAGGGTGCCTTTGCAGTTCCTGCACCACCCAGCAGTGCGGTTAATAGTGGTGTCGTcagctgcaacaataacaataacagcagcagcagcaacaacaacaacaacaacaggaattGCAATCTGCGCCGCTCCATCAGTGACTTGGAGAGTTTTCTCAGCCCGAAGAGCAACGCGAACTGTAGCCTGGGCCAAGCGCTAGCCACCACTTGCAGCACCACCACAACTACAGCGGTGCTGCCCGCTGCAACCACCATTAAGAGCAGTAATGGTCTAAGCATTCAACAGATTGGCCTACCGCAAAGCATCGAGATCTTCAGCGGTGGGCAGAGACAGCCGAAAACTTTGAGTTTGGGCAGTGGTGCAAATACGATTACGATAACCACCAACAATGTGCctacgacgacgacaatgagCGCTCTGTCGGCACTAAAGGGTGCCAGCAGCATAAGCAGTGTCTCTGGCAATGCGGATCCCAAGGATTCCACATTGATTGAGCTACTCAAGCGTGGCACGAGGATTGCCGTCACCTCGAAGAAGGCACAAAACACAAGTACAAATCTGCTGCTCAGCAATGCGGCCAACGCCGAACTCATTGGCAACAGTGTCCAGGCAGCGACTCGTCGTCAGATTatcaccaacaacaatcgcaCAGTGATTATACCCTCGGATGTGCATGTCGTGTCCACAAAGTCCAACAAGGTGAGCTGCAACGGAGCAAGCAATGCGAACAGTATCTCTCTGCCGGATGGCACACCACTCTCACTGACCATTGGAGGTAATCAGGAGAGCATTGGGCCAAGCAGCATCTCGGGTGGTGTCAATGGGGTTTATGCGGTCACCTACACGACCAATACGGATGCAGTCGATCTATTTGGCAACGCCGAGGTGTTTAATGTCTCGGATACGGAAATGCTATTGCAAACTGTGGACACAATGGAACTGCTGAACAATGAGGAAGATAATGAGGATGAGGGGCACAAGCAAGGCGAACATTCCGAGAACTTTCCGCTGCTCAACAGTGTTGACGACGATGTGCTGATCAAGTTGGAGCCAGAGTCGGGCACACCCaataccaacaccaacacaaacaccaacCCTAATCAGACAACAACGCCGTTGCCCACGTTCCAGCAATTCCATTCCAAGGAGCTCATCATGCAGAACAGCTCGCAGATTCAGGCGATTGCCAATATGCGAGGAGGTGTTCTCTCATCACCATTGCATTCGCCATTGGCTTATCCGACACCGCCGTCCAGTCACGAGAATGTTGCTCAATCCTCGCCATTTATTGAAGATGCTGCGGCTCAGTTTGTGGACGCCAACCACACGTTCTTCGGGGATAAGACAGATTTCTCGCACGTCTATTTCAAGACGGATGACGATTGCATGCAGCATCAGCTCAGTGAGAATGACAATGAGAAGATACTCAAATTAAAGACGGTGCTGGAGGAGAGCGCTTTTGATGCTTCGATCAAGGTGGAGGATCTCTTAAATGGCACCGAGGATGATGCTGAGTGTGATCTGCGTGAGTTTGCGGAAACTAATTTGTCGTTTCTCGATGAGGATCAGGAGTTCCTGAATGACTCACGTAATGCCACCTCACCTCTCTCAGAGTCCTTCTTCACCAGTGGCATTGGCTCCGCGGAGGATGTTAAGCAGGTGCTTCGCGAGGTCCTTCCAGATGAGAatatgcaattgcagctgagCAGCGAACAGCTGGCTGAGAATATCATCGATCTCTACTATTTGCCCGGATTGGGACTGCAATCGCAAATGATGTCCAACTCGGATGATCCGCTCTTGTCCTCTTCTCCCCGAGATTTTGGCATGCAGCGCCAGGTGGTCCATGCGACGACGTCGGCGATTTCATCGACGGTGCCGTCCATGGAGCAGTTGCAGTCTTCCGGGGTCATGtttgagcaacaacagcaacaattgccgcctcaacagcagcaagacgAGCAGCAAGAACTGCaacctcagcagcagcaacagttgggGATCgggcaacagccgcagcagcagcaacagtccgACTTTATGCTATCAAACTTTACGCCCGTGTCCTGTCAAACGCAGTATTTGGACACCAATCAGCAGCCGATGACAATGCAGCCACTCAACAATCTGCTGCAACCATTACTCTtcggcagcaacaataacagcaacaacaacaacaacagcatcgacAAGCAACAAGAGTTTGGAACGCtgctgcaaacaacaaacggaCAAACATCCGCTCTGGATGCTAGCCTGATCTTTGCCTGCGGCGACGGAATCAAAAGTAattccaacaacaataaatcgCTGATTGCCAACTTACCCGCAGCAGCTCCAGTGGCGACACCATCACCCAGCTTTTCCAATCTGCAACCGTTATCCAATCAAACGAATTCCATATTGAAGCGTCGCTTGCGCTCAAATGGTGCACAGGATGTGCACAAGTTCTCCAAATTCCATACGCTATCGCCACATCGCTCCAAGCTGCGCAAACCCTCGCGCACCCACTACACTCCGGCGCCAATATTGAATCCGGATCGGAAGGGCACCGGACTATATTACAGTGTACGCAAGCAGCTTGGTCAAAACATGTTTGATGCCTTTGACGATGATTTCGGAGATCCCGTGGGCCTGGTGGACTTCTCCGATGAGTCCAAGGTGAATCTGGGCTCGACGTATCAAGCGCAGATACCCGCCTGCAAGCCACTCGAAGAGGCCATCAAGGAGACAATGTGCGCGGACATGATGTGGGATCCCAGCGTACAGATCGACGAGAAAATACTAATGCGCTACATAGATCTCAGCAAATCCTCGGCCGTGCCCATGGGCAGCCACTCAGAGGAGGTAGCCCTCCAAGCCCTGCTTGAGGCGAAAGGTAattcggcggcggcggtgttAACCCTTCTGCAGACGCAGTCTAGCGCATTCCAAATGAAATGGACAGCCTACGAACTGGAGCAGTTTTTACGCGGTCTGGAAAGGCATGGCAAAGACTTTGGCAAAATCGCTAGCGAGcTGCTCACCAAGACATCGGGCGAATGCGTGCAgatgtattatttttggaaGAAGCTCTGTGTTGATTACAAGGTATCCCACCTGAAAATGGAGCCAGTTCCGCCCAGCACCCCAGTTGTGGAGCAAAAGCCATACGTCTGCGAGATTGCCGATTGCTCAGCGAGCTTCAGCTCGAAGGCGGCGCTGCACGGTCATGTTCGCATACACGCTTATGGTAGaaatgccagcaacagcaacagcaacaacaacaacaatcagcatgCCGCGGCAGTTagtgccaacaacagcaacaaccaccatagttccagcaacagcaacaacaacaccaataacagCAACGCATGCGCGCCCCAGCctagcagcaatagcaatcaATGCATcagtgcaacaataacagcaacaaccgtAGCGCACACAAGtggcaataacagcagcaacaccaataccaatgccaacaataataacagcaacaacaacaacatcaacagcaacatcgcCAATGCAACTGGCACTTCCATAAACCCAACAttgctagcagcagcagcaacaacatcgacagcaacaaaagacagcaacagcaacaattccAATATTGCAAAGGACACCGAGTTCCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTGAAAAGTCGCAGCGCCCATATGAAAACGCATCGTGTGCAAGAATCAGAACAATCAACCAATTCCAAACAGCAATCGGCCACCAATGCAAATCTGTCAGCtgttgcagtggcagtggcacttgcagcagcatcagcatcggcagcttcagcagcagcatcagcagcatcagcagcgtcTGTGGCATctacagcagcatcagcttcagcaGCACCCTCTGCAGTATCGGTTACGGCCTCCACTTCTTCGTAG
Protein Sequence
MAAINTVSKSIHLPLTNLSAQRVLMCSASLGSEGSVTLQLRDASTLGTAADSTTPTTTSTSTSATAATTTTTTSNPIATSSLSSQSNGVTVLETSSSAVSGITSALENALTVGYPDPEMLADVLGTIQTASLKNNHNNSSNNSNNNTSIKRSNNNKSSSTASTILNSSGIHLNSPNKITITRRSASNKISVQTVSTSTNTTISSIGGSKTNYIKNCLIRSSSCSNTATNVTTLAQILSNSSTSSAASLLSQHNNNSNCSNSSNFSIASSVGSICSVSSNTSNTSSSSNCSSSNSNDSNSSLGQSLSFKSNGRNVAGIVTASTTSTSTAATGIGIVTVDNAPRKSRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECRADGCGKSYCDARSLRRHSENHHGCVPTSESLSPTASSNGNVSNGTGSVTGSGSSSSSNNGIGVATSSLSLSPATASGDASSPDGATCIRTYISTGSSIVDAATGIALSDEQIRAMNLPIKTGVTLLSPTTSTCSTTSSTASSISCSSSGNGNGSSVVASSPTITLCDGATLEAEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTETAQVSARPRTWNMQLLNNVQNVTLTVDEGTELVASASSPPDEVKDDELGQQQLVTAINPHLLNIVKVDKPVECNLCHRKFKNVPALNGHMRLHGGYFKKDPETKRSEKKDSGGPPLQTASIGVRALIEEKIISKRKDINKGAFAVPAPPSSAVNSGVVSCNNNNNSSSSNNNNNNRNCNLRRSISDLESFLSPKSNANCSLGQALATTCSTTTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGQRQPKTLSLGSGANTITITTNNVPTTTTMSALSALKGASSISSVSGNADPKDSTLIELLKRGTRIAVTSKKAQNTSTNLLLSNAANAELIGNSVQAATRRQIITNNNRTVIIPSDVHVVSTKSNKVSCNGASNANSISLPDGTPLSLTIGGNQESIGPSSISGGVNGVYAVTYTTNTDAVDLFGNAEVFNVSDTEMLLQTVDTMELLNNEEDNEDEGHKQGEHSENFPLLNSVDDDVLIKLEPESGTPNTNTNTNTNPNQTTTPLPTFQQFHSKELIMQNSSQIQAIANMRGGVLSSPLHSPLAYPTPPSSHENVAQSSPFIEDAAAQFVDANHTFFGDKTDFSHVYFKTDDDCMQHQLSENDNEKILKLKTVLEESAFDASIKVEDLLNGTEDDAECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQLSSEQLAENIIDLYYLPGLGLQSQMMSNSDDPLLSSSPRDFGMQRQVVHATTSAISSTVPSMEQLQSSGVMFEQQQQQLPPQQQQDEQQELQPQQQQQLGIGQQPQQQQQSDFMLSNFTPVSCQTQYLDTNQQPMTMQPLNNLLQPLLFGSNNNSNNNNNSIDKQQEFGTLLQTTNGQTSALDASLIFACGDGIKSNSNNNKSLIANLPAAAPVATPSPSFSNLQPLSNQTNSILKRRLRSNGAQDVHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYYSVRKQLGQNMFDAFDDDFGDPVGLVDFSDESKVNLGSTYQAQIPACKPLEEAIKETMCADMMWDPSVQIDEKILMRYIDLSKSSAVPMGSHSEEVALQALLEAKGNSAAAVLTLLQTQSSAFQMKWTAYELEQFLRGLERHGKDFGKIASELLTKTSGECVQMYYFWKKLCVDYKVSHLKMEPVPPSTPVVEQKPYVCEIADCSASFSSKAALHGHVRIHAYGRNASNSNSNNNNNQHAAAVSANNSNNHHSSSNSNNNTNNSNACAPQPSSNSNQCISATITATTVAHTSGNNSSNTNTNANNNNSNNNNINSNIANATGTSINPTLLAAAATTSTATKDSNSNNSNIAKDTEFPCKVCGKVFNKVKSRSAHMKTHRVQESEQSTNSKQQSATNANLSAVAVAVALAAASASAASAAASAASAASVASTAASASAAPSAVSVTASTSS